View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17721_low_12 (Length: 447)

Name: NF17721_low_12
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17721_low_12
NF17721_low_12
[»] chr7 (11 HSPs)
chr7 (22-256)||(4994875-4995109)
chr7 (298-399)||(4994774-4994875)
chr7 (396-437)||(23897240-23897281)
chr7 (394-437)||(4988217-4988260)
chr7 (394-437)||(4992315-4992358)
chr7 (349-398)||(2927922-2927971)
chr7 (349-398)||(13287710-13287759)
chr7 (396-437)||(6018358-6018399)
chr7 (396-437)||(9767785-9767826)
chr7 (396-437)||(10418557-10418598)
chr7 (396-437)||(23127950-23127991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (396-437)||(41339-41380)
[»] chr4 (2 HSPs)
chr4 (349-398)||(11252129-11252178)
chr4 (396-437)||(9849763-9849804)
[»] chr1 (9 HSPs)
chr1 (349-437)||(15526806-15526893)
chr1 (349-398)||(16817108-16817157)
chr1 (396-437)||(18098304-18098345)
chr1 (395-437)||(16363623-16363665)
chr1 (349-398)||(22426515-22426564)
chr1 (349-398)||(25402435-25402484)
chr1 (347-391)||(15542306-15542350)
chr1 (396-436)||(24283003-24283043)
chr1 (396-432)||(24901214-24901250)
[»] chr8 (7 HSPs)
chr8 (348-398)||(19265870-19265920)
chr8 (396-437)||(7985117-7985158)
chr8 (207-332)||(34184771-34184896)
chr8 (396-437)||(24380409-24380450)
chr8 (396-437)||(24381382-24381423)
chr8 (396-437)||(25180777-25180818)
chr8 (349-437)||(28275324-28275411)
[»] chr6 (4 HSPs)
chr6 (396-437)||(23644373-23644414)
chr6 (402-437)||(20080736-20080771)
chr6 (396-434)||(22564605-22564643)
chr6 (351-392)||(26820914-26820955)
[»] chr5 (8 HSPs)
chr5 (396-437)||(17469614-17469655)
chr5 (349-391)||(18939575-18939617)
chr5 (349-391)||(29988012-29988054)
chr5 (349-398)||(20548453-20548502)
chr5 (396-437)||(22845851-22845892)
chr5 (396-437)||(26122382-26122423)
chr5 (349-389)||(20860396-20860436)
chr5 (397-433)||(34488861-34488897)
[»] chr3 (7 HSPs)
chr3 (349-398)||(20021817-20021866)
chr3 (349-398)||(27074000-27074049)
chr3 (278-349)||(3213416-3213487)
chr3 (396-437)||(3114765-3114806)
chr3 (349-398)||(16228344-16228393)
chr3 (396-437)||(18535770-18535811)
chr3 (396-437)||(20891701-20891742)
[»] chr2 (7 HSPs)
chr2 (349-398)||(25537604-25537653)
chr2 (396-436)||(18553290-18553330)
chr2 (351-398)||(18458366-18458413)
chr2 (349-398)||(25196659-25196708)
chr2 (349-398)||(25922653-25922702)
chr2 (396-437)||(35680156-35680197)
chr2 (350-398)||(18120546-18120594)
[»] scaffold0451 (2 HSPs)
scaffold0451 (345-392)||(5784-5831)
scaffold0451 (396-437)||(10149-10190)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 4995109 - 4994875
Alignment:
Q  22 ggagacaatcttaggaaggcgttgctccacaaatccatttgattgttccatcagtcgggcctcaacaggttcactcaattctatataattgtcagctact 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4995109 ggagacaatcttaggaaggcgttgctccacaaatccatttgattgttccatcagtcgggcctcaacaggttcactcaattctatataattgtcagctact 4995010  T
Q  122 aaatcatatgttcaatgggttgaaatgttggtgcctctgtctagagattataagattcttaattttgcaaggttatatggagaacatggaaaatcaatta 221  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4995009 aaatcatatgctcaatgggttgaaatgttggtgcctctgtctagagattataagattcttaattttgcaaggttatatggagaacatggaaaatcaatta 4994910  T
Q  222 tggagaatattagtagattcactgtgtagtacggt 256  Q
     ||||||||||||||||||||||||||||||||||    
T  4994909 gggagaatattagtagattcactgtgtagtacggt 4994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 298 - 399
Target Start/End: Complemental strand, 4994875 - 4994774
Alignment:
Q  298 tttatcattgatataaacaaccttctcatggtactctttccttgaaccaaatgatgacaggtcatcatacgttacttttaacatgtttttcagtttattt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||    
T  4994875 tttatcattgatataaacaaccttctcatggtactctttccttgaaccaaatgatgacaggtcatcttacgttatttttagcatgttttttagtttattt 4994776  T
Q  398 tt 399  Q
    ||    
T  4994775 tt 4994774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 23897281 - 23897240
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23897281 ttttaccagcaaaacagaggagtattatatcaattgcctatg 23897240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 4988260 - 4988217
Alignment:
Q  394 atttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  4988260 atttttaccaacaaaatagaggagtattatatcaattgcctatg 4988217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 4992358 - 4992315
Alignment:
Q  394 atttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  4992358 atttttaccaacaaaatagaggagtattatatcaattgcctatg 4992315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 2927971 - 2927922
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| ||||||| | ||| ||||||||||||||||||||    
T  2927971 tgatgacaggtcatcttacgttattcttagcatgtttttcagtttatttt 2927922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 13287710 - 13287759
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||||||||    
T  13287710 tgatgacaagtcatcttacgttattcttaacatgtttttcagtttatttt 13287759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 6018399 - 6018358
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||| |||||||||||||||||| || |||||||||||    
T  6018399 ttttaccaacaaaacagaggagtattagattaattgcctatg 6018358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 9767826 - 9767785
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||| |||| |||||||||||| ||||||||||||||    
T  9767826 ttttaccagaaaaatagaggagtattagatcaattgcctatg 9767785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 10418598 - 10418557
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||| |||||||||||||||||||| | ||||||||||||    
T  10418598 ttttactagcaaaacagaggagtattagagcaattgcctatg 10418557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 23127950 - 23127991
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||    
T  23127950 ttttaccagcaaagcagaggagtattagatcaattgcttatg 23127991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 41380 - 41339
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  41380 ttttaccagcaaaacagaggagtattagatcaattgcctatg 41339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 11252129 - 11252178
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  11252129 tgatgacaggtcatcttacgttatttttagcatgtttttcagtttatttt 11252178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 9849763 - 9849804
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  9849763 ttttaccaacaaaacaaaggagtattagatcaattgcctatg 9849804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 15526806 - 15526893
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||| |||||| ||||||| | ||| |||||||||||||  ||||| ||||||||||||| ||||||||| |  |||||||||||    
T  15526806 tgatgacatgtcatcttacgttattcttatcatgtttttcagtagatttt-accagcaaaacaggggagtattagagtaattgcctatg 15526893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 16817108 - 16817157
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||||||||    
T  16817108 tgatgacaagtcatcttacgttattcttaacatgtttttcagtttatttt 16817157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 18098304 - 18098345
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  18098304 ttttaccagcaaaccagaggagtattagatcaattgcctatg 18098345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 16363665 - 16363623
Alignment:
Q  395 tttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||    
T  16363665 tttttaccaacaaaatagaggagtattagatcaattgcctatg 16363623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 22426515 - 22426564
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| ||||| | | ||| ||||||||||||||||||||    
T  22426515 tgatgacaggtcatcttacgtcattcttagcatgtttttcagtttatttt 22426564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 25402435 - 25402484
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| | ||||| | ||| ||||||||||||||||||||    
T  25402435 tgatgacaggtcatcttgcgttattcttagcatgtttttcagtttatttt 25402484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 15542306 - 15542350
Alignment:
Q  347 aatgatgacaggtcatcatacgttacttttaacatgtttttcagt 391  Q
    |||||||||| |||||| ||||||| | |||||||||||||||||    
T  15542306 aatgatgacatgtcatcttacgttattcttaacatgtttttcagt 15542350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 24283043 - 24283003
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctat 436  Q
    ||||||||||||| ||||||||||||| ||||||| |||||    
T  24283043 ttttaccagcaaagcagaggagtattagatcaatttcctat 24283003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 24901250 - 24901214
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgc 432  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  24901250 ttttaccagcaaaacagagaagtattagatcaattgc 24901214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 19265920 - 19265870
Alignment:
Q  348 atgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||||||||||||| ||||||| | ||| ||||||||||||||||||||    
T  19265920 atgatgacaggtcatcttacgttattcttagcatgtttttcagtttatttt 19265870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 7985158 - 7985117
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  7985158 ttttaccagcaaaacagaggagtattaaatcaattgtctatg 7985117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 332
Target Start/End: Original strand, 34184771 - 34184896
Alignment:
Q  207 atggaaaatcaattatggagaatattagtagattcactgtgtagtacggtgagagaaacttgaacaaatttcataagttgcaattgttccctttatcatt 306  Q
    |||||||||||| || |||| ||||    ||||||||||| |||| || |||| | |||  |||| | || |||||||||||| | |||||||||||||     
T  34184771 atggaaaatcaactacggagcatatcgaaagattcactgtatagtgcgatgaggggaaccagaacgagttccataagttgcaactattccctttatcatg 34184870  T
Q  307 gatataaacaaccttctcatggtact 332  Q
    ||||  ||| ||||||||||||||||    
T  34184871 gataggaacgaccttctcatggtact 34184896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 24380409 - 24380450
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  24380409 ttttaccagcagaacagaggagtattagaacaattgcctatg 24380450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 24381382 - 24381423
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||| |||||||||||||| || ||||||||||||    
T  24381382 ttttaccagcagaacagaggagtattttaacaattgcctatg 24381423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 25180777 - 25180818
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  25180777 ttttaccaggaaaccagaggagtattagatcaattgcctatg 25180818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 28275324 - 28275411
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||  ||||| ||||||| | ||| |||||||||||||   |||| ||||| ||||||||||||||||| |  |||||||||||    
T  28275324 tgatgacaaatcatcttacgttattcttagcatgtttttcagtaggtttt-accaggaaaacagaggagtattagagtaattgcctatg 28275411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 23644373 - 23644414
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  23644373 ttttaccagcaaaacataggagtattagatcaattgcctatg 23644414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 437
Target Start/End: Complemental strand, 20080771 - 20080736
Alignment:
Q  402 cagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20080771 cagcaaaacagaggagtattagatcaattgcctatg 20080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 22564605 - 22564643
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcct 434  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  22564605 ttttaccagcaaaacagaggagtattagagcaattgcct 22564643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 26820955 - 26820914
Alignment:
Q  351 atgacaggtcatcatacgttacttttaacatgtttttcagtt 392  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||    
T  26820955 atgacaggtcatcttacgttactcttagcatgtttttcagtt 26820914  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 17469614 - 17469655
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  17469614 ttttaccagcaaaacagaggagtattagagcaattgcctatg 17469655  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 18939617 - 18939575
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagt 391  Q
    ||||||||||||||| ||||||| | |||||||||||||||||    
T  18939617 tgatgacaggtcatcttacgttattcttaacatgtttttcagt 18939575  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 29988054 - 29988012
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagt 391  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||    
T  29988054 tgatgacaggtcatcttacgttatttttagcatgtttttcagt 29988012  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 20548453 - 20548502
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| ||||||| |  || ||||||||||||||||||||    
T  20548453 tgatgacaggtcatcttacgttattcctagcatgtttttcagtttatttt 20548502  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 22845851 - 22845892
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||||||||||| ||| |||||| ||||||||||||||    
T  22845851 ttttaccagcaaaacataggtgtattagatcaattgcctatg 22845892  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 26122423 - 26122382
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||| | |||||| |||||    
T  26122423 ttttaccagcaaaacagaggagtattagagcaattgtctatg 26122382  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 20860436 - 20860396
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttca 389  Q
    ||||||||||||||| ||||||||| ||| |||||||||||    
T  20860436 tgatgacaggtcatcttacgttactgttagcatgtttttca 20860396  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 34488897 - 34488861
Alignment:
Q  397 tttaccagcaaaacagaggagtattatatcaattgcc 433  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  34488897 tttaccagcaaaacagatgagtattagatcaattgcc 34488861  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 20021817 - 20021866
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  20021817 tgatgacatgtcatcttacgttactcttagcatgtttttcagtttatttt 20021866  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 27074049 - 27074000
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||| |||||||| ||||||| ||||| ||||||||||||||||||||    
T  27074049 tgatgataggtcatcttacgttatttttagcatgtttttcagtttatttt 27074000  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 3213416 - 3213487
Alignment:
Q  278 cataagttgcaattgttccctttatcattgatataaacaaccttctcatggtactctttccttgaaccaaat 349  Q
    ||||||||| | |||||||||||||| || |||  |||| |||||||||| ||||||||||||  |||||||    
T  3213416 cataagttggagttgttccctttatcgttaataggaacagccttctcatgatactctttccttccaccaaat 3213487  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 3114765 - 3114806
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  3114765 ttttaccagcaaaacagaggagtattagagtaattgcctatg 3114806  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 16228344 - 16228393
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| ||||||| | ||| |||| |||||||||||||||    
T  16228344 tgatgacaggtcatcttacgttattcttagcatgcttttcagtttatttt 16228393  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 18535811 - 18535770
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||    
T  18535811 ttttaccagcaaagcagaggagtattagatcaattgcttatg 18535770  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 20891701 - 20891742
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  20891701 ttttaccaacaaaacataggaatattatatcaattgcctatg 20891742  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 25537653 - 25537604
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||||||| ||||||| | ||| ||||||||||||||||||||    
T  25537653 tgatgacaggtcatcttacgttattcttagcatgtttttcagtttatttt 25537604  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 18553330 - 18553290
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctat 436  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  18553330 ttttaccagtaaaacagaggagtattagatcaattgcctat 18553290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 18458366 - 18458413
Alignment:
Q  351 atgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  18458366 atgacaggtcatcataagttattattaacatgtttttcagtctatttt 18458413  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 25196708 - 25196659
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    |||||||| |||||| || |||| | ||||||||||||||||||||||||    
T  25196708 tgatgacatgtcatcttatgttattcttaacatgtttttcagtttatttt 25196659  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 25922702 - 25922653
Alignment:
Q  349 tgatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||    
T  25922702 tgatgacaggttatcttacgttatttttagcatgtttttcaatttatttt 25922653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 35680156 - 35680197
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    ||||||||||||||||||||||||||| | |||||| |||||    
T  35680156 ttttaccagcaaaacagaggagtattagagcaattgtctatg 35680197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 18120546 - 18120594
Alignment:
Q  350 gatgacaggtcatcatacgttacttttaacatgtttttcagtttatttt 398  Q
    ||||||| |||||| ||||||| | ||| ||||||||||||||||||||    
T  18120546 gatgacatgtcatcttacgttattcttagcatgtttttcagtttatttt 18120594  T

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Target: scaffold0451 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 5831 - 5784
Alignment:
Q  345 caaatgatgacaggtcatcatacgttacttttaacatgtttttcagtt 392  Q
    |||||||||| |||||||| | ||||| ||||||||||||||||||||    
T  5831 caaatgatgaaaggtcatctttcgttatttttaacatgtttttcagtt 5784  T

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Target: scaffold0451; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 10149 - 10190
Alignment:
Q  396 ttttaccagcaaaacagaggagtattatatcaattgcctatg 437  Q
    |||||| |||||||||||||||||||| |||||||| |||||    
T  10149 ttttactagcaaaacagaggagtattagatcaattgtctatg 10190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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