View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_13 (Length: 429)
Name: NF17721_low_13
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 52806951 - 52807359
Alignment:
| Q |
17 |
agtttgatggtgaggctgatgagacttaagacaagctcttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgt |
116 |
Q |
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| T |
52806951 |
agtttgatggtgaggctgatgagacttaagacaagcccttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgt |
52807050 |
T |
|
| Q |
117 |
ggatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807051 |
ggatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatca |
52807150 |
T |
|
| Q |
217 |
cttgatatatacacaccccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807151 |
cttgatatatacacaccccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaac |
52807250 |
T |
|
| Q |
317 |
tagcttaaagagtttcaatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatagttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807251 |
tagcttaaagagtttcaatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatagttc |
52807350 |
T |
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| Q |
417 |
ttctcactc |
425 |
Q |
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|| |||||| |
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| T |
52807351 |
ttgtcactc |
52807359 |
T |
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