View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17721_low_2 (Length: 631)
Name: NF17721_low_2
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 4 - 613
Target Start/End: Complemental strand, 53123740 - 53123129
Alignment:
| Q |
4 |
tgggtagattattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctatt |
103 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123740 |
tgggaagatcattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctatt |
53123641 |
T |
|
| Q |
104 |
cttcccaaaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaacccggatactacaaaacaaaactatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53123640 |
cttcccaaaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcgaatccaacccggatactacaaaacaaaactatt |
53123541 |
T |
|
| Q |
204 |
ctggaaaatggtctcaaaaggctaataccctttgggagcaattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53123540 |
ctggaaaatggtctcaaaaggctaataccctttgggagcaattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactga |
53123441 |
T |
|
| Q |
304 |
acttcttggtattatgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgct |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123440 |
acttcttggtattatgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgct |
53123341 |
T |
|
| Q |
404 |
tttaaannnnnnncactctt--cacagttaccaagaattgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttcttatca |
501 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123340 |
tttaaatttttttcactcttcacacagttaccaagaattgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttcttatca |
53123241 |
T |
|
| Q |
502 |
atatgacgaaggaaatccaagtttttgcttgtaactttgttccagtccctctgaatattgttcaaatcatcaaaagcatgtatagattgatatacctatc |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123240 |
atatgacgaaggaaatccaagtttttgcttgtacctttgttccagtccctctgaatattgctcaaatcatcaaaagcatgtatagattgatatacctatc |
53123141 |
T |
|
| Q |
602 |
ggttgtaggaca |
613 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53123140 |
ggttgtaggaca |
53123129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 6504730 - 6504682
Alignment:
| Q |
318 |
tgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgca |
366 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
6504730 |
tgaaaggtcttcaatatcttcattttacttgtgtgcctcagattttgca |
6504682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 6505112 - 6505046
Alignment:
| Q |
111 |
aaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaa |
177 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
6505112 |
aaaattgcctcaaagacactccaagtagctttgacaaaagaaaaccatatgcttggttcaagtccaa |
6505046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 6505246 - 6505155
Alignment:
| Q |
9 |
agattattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatcta |
101 |
Q |
| |
|
|||||||| | ||||||||||||||| | || |||||| ||||||||||||| ||||| |||| ||| ||||||||| |||| ||||||| |
|
|
| T |
6505246 |
agattattattagcatagttttaggagctgttactggattaattggttctgttctcttt-gcattcgtgattcgttgtgttgtttggtatcta |
6505155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University