View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_20 (Length: 368)
Name: NF17721_low_20
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 18524688 - 18524972
Alignment:
| Q |
14 |
aatatcatcaactttcaatacaaatannnnnnnnaaaaagcaaacgaagttgcagcaagatgcaacccctggatatattaataacagatgaaagaacaaa |
113 |
Q |
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| T |
18524688 |
aatatcatcaattttcaatacaaatattttttaaaaaaagcaaaggaagttgcaggaagatgcaacccctggatatattaataacagatgaaagaacaaa |
18524787 |
T |
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| Q |
114 |
acgggggaatgaggggggacataaacctaaccctcaaaagagttaacaaagtctaaaa-ttaggaataccaagtccattcctatcaaaatggtcatatat |
212 |
Q |
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| T |
18524788 |
aaaggg-aataaagggggacataaacctaaccctcaaaagagttaacaaagtctaaaaattaggaataccaagtccattcctatcaaaatggtcatatat |
18524886 |
T |
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| Q |
213 |
ttctacaggcagattttgaaacctaagtgtaagaaggtatgaagagaccaaagttagccagttgatatgcaaaatggtttccttctc |
299 |
Q |
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| T |
18524887 |
ttgtacaggcagattttgaaacc-aagtgtaagaaggtatggagagaccaaagttagcaagttgatctgcaaaatggtttccttctc |
18524972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 18525281 - 18525337
Alignment:
| Q |
297 |
ctccatcagtgttgtatt-attacaatcaagaattggaggggaccaacgaacctctt |
352 |
Q |
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| T |
18525281 |
ctccatcagtgttgtatttaatacaatcaagaattggaggggaccaacgaacctctt |
18525337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 6162237 - 6162314
Alignment:
| Q |
127 |
gggggacataaa-cctaaccctcaaaagagttaacaaagtctaaaattaggaataccaagtccattcctatcaaaatg |
203 |
Q |
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| T |
6162237 |
gggggacataaaacctaaccctcaggagagttaatgaagcctaaaattaggaatatcaagactattcctatcaaaatg |
6162314 |
T |
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