View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_24 (Length: 323)
Name: NF17721_low_24
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 31246485 - 31246794
Alignment:
| Q |
1 |
tcatcaacaacaacaaccacactctccagatccaaatccacacaacattcagacacagaggacactcttcctttctcatctcccgtagagtttcggggag |
100 |
Q |
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| T |
31246485 |
tcatcaacaacaacaaccacactctccagatccaaatccacacaacattcagacacagaggacactcttcctttctcatctcccgtagagtttcggggag |
31246584 |
T |
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| Q |
101 |
aagcattttgaatgttgtcgacgtcaacaacgtgagacttgtcttgttgtcttccggtaatgaaatatccgatgatacctgagttgagaatcttcatgtc |
200 |
Q |
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| T |
31246585 |
aagcattttgaatgttgtcgacgtcaacaacgtgagacttgtcttgttgtcttccggtaatgaaatatccgatgatacctgagttgagaatcttcatgtc |
31246684 |
T |
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| Q |
201 |
atggttttggttggtaggaagagatcatttgtaatactcatcaaggtttgttgaaagaataagaaaaatgtgcagttttttatgcagattcaagc-aaga |
299 |
Q |
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| T |
31246685 |
atggttttggttggtaggaagagatcatttgtaatacacatcaaggtttgttgaaagaataagaaaaatgtgcagttttttatgcagattcaagcaaaga |
31246784 |
T |
|
| Q |
300 |
gtgatgtgaa |
309 |
Q |
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| T |
31246785 |
gtgatgtgaa |
31246794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 31222107 - 31222149
Alignment:
| Q |
17 |
ccacactctccagatccaaatccacacaacattcagacacaga |
59 |
Q |
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| T |
31222107 |
ccacactctccagatccaattccacacaacattcagacacaga |
31222149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 31222371 - 31222428
Alignment:
| Q |
253 |
gaaagaataagaaaaatgtgcagtttttt-atgcagattcaagcaagagtgatgtgaa |
309 |
Q |
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||||||| |||||||| | |||||||||| |||| ||||||||||||||||||||||| |
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| T |
31222371 |
gaaagaagaagaaaaaggcgcagtttttttatgcggattcaagcaagagtgatgtgaa |
31222428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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