View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17721_low_26 (Length: 307)
Name: NF17721_low_26
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 47947341 - 47947061
Alignment:
| Q |
18 |
taaacatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47947341 |
taaacatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactataagtt |
47947242 |
T |
|
| Q |
118 |
cctatttattgaaagctataatcttatagtagttgnnnnnnnataaccacaaatccatatattgattgcggtgcagcaagattcataccatacaacaggt |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47947241 |
cctatttattgaaagcta--atcttatagtagttgtttttttataaccacaaatccatatattgattgcggtgcagcaagattcataccatacaacaggt |
47947144 |
T |
|
| Q |
218 |
tgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttctaccgtaggaccttattcatctca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47947143 |
tgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttctaccgtaggaccttattcatctca |
47947061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 47941371 - 47941275
Alignment:
| Q |
21 |
acatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttc |
118 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47941371 |
acatgcctaatgctctctctatatgttatggtt-aggttaatccgaagttgtatggtgaccacaactcccgattgtttaccgcttggactgtaagttc |
47941275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 47941135 - 47941019
Alignment:
| Q |
179 |
ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta |
278 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |||||||| || || ||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
47941135 |
ttgattgcggtgcagaaagattcataccagtcaacaggttgctttgatcttacctgtagtggttttgtgcaaatagccacagagtttgcacttggttcta |
47941036 |
T |
|
| Q |
279 |
ccgtaggaccttattca |
295 |
Q |
| |
|
| || | |||||||||| |
|
|
| T |
47941035 |
cagtggaaccttattca |
47941019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 47928778 - 47928708
Alignment:
| Q |
47 |
tatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| |
|
|
| T |
47928778 |
tatggtttaggttaatccaaagttgtatggtgaccacaacacccgcttgttcacctattggactgtaagtt |
47928708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 47920675 - 47920583
Alignment:
| Q |
40 |
tatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttcctatttattgaaag |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| || |||| || || | | ||||||||||||||| |||||||||||| |
|
|
| T |
47920675 |
tatatgttatggttcaggttaatccaaagttgtatggtgaccataatacccgtttcttcgtctattggactgtaagttctcatttattgaaag |
47920583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 47909690 - 47909616
Alignment:
| Q |
177 |
tattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaa |
251 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| | ||||||||||||| |||||||||||| | || |||||||||| |
|
|
| T |
47909690 |
tattgattgtggtgcagaaagatacatacaagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaa |
47909616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University