View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17721_low_27 (Length: 297)

Name: NF17721_low_27
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17721_low_27
NF17721_low_27
[»] chr1 (6 HSPs)
chr1 (18-227)||(8813505-8813714)
chr1 (68-258)||(235886-236076)
chr1 (101-253)||(229858-230010)
chr1 (76-209)||(250568-250701)
chr1 (71-183)||(4440661-4440773)
chr1 (245-280)||(8813717-8813752)
[»] chr3 (14 HSPs)
chr3 (66-235)||(9341533-9341699)
chr3 (94-194)||(9403059-9403159)
chr3 (122-228)||(9370461-9370567)
chr3 (94-194)||(9421298-9421398)
chr3 (124-197)||(9348838-9348911)
chr3 (70-237)||(9344639-9344803)
chr3 (101-238)||(9494028-9494165)
chr3 (67-174)||(9625696-9625803)
chr3 (107-179)||(9433723-9433795)
chr3 (56-172)||(9645575-9645691)
chr3 (70-174)||(9654582-9654686)
chr3 (67-237)||(9449095-9449259)
chr3 (94-155)||(9441015-9441076)
chr3 (67-224)||(9613061-9613218)
[»] chr2 (1 HSPs)
chr2 (74-197)||(20693476-20693599)
[»] chr5 (1 HSPs)
chr5 (134-227)||(18571864-18571957)
[»] scaffold0038 (2 HSPs)
scaffold0038 (67-194)||(20300-20427)
scaffold0038 (67-194)||(20444-20571)
[»] chr6 (9 HSPs)
chr6 (67-194)||(28177179-28177306)
chr6 (67-194)||(28219802-28219929)
chr6 (72-162)||(7052957-7053047)
chr6 (67-194)||(28177035-28177162)
chr6 (67-194)||(28219946-28220073)
chr6 (76-162)||(7026618-7026704)
chr6 (92-194)||(28133077-28133179)
chr6 (67-194)||(28132933-28133060)
chr6 (73-162)||(7042334-7042423)
[»] scaffold0455 (1 HSPs)
scaffold0455 (67-194)||(10839-10966)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 8813505 - 8813714
Alignment:
Q  18 agcaggttatgactgtggctctgattgttcatccacagccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813505 agcaggttatgactgtggctctgattgttcatccacagccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaa 8813604  T
Q  118 caattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  8813605 caattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcattcttcttccatcccaaatcaccaccgtaacattttaaccatca 8813704  T
Q  218 aattcccact 227  Q
    ||||||||||    
T  8813705 aattcccact 8813714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 258
Target Start/End: Complemental strand, 236076 - 235886
Alignment:
Q  68 aggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 167  Q
    ||||||| |||||| |||||||| |||| ||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  236076 aggcagattggtctaaactgccaaaggatcttctgaatcttatatcaaaacaaattgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 235977  T
Q  168 ttggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatc 258  Q
    |||||||||||||||||| || |||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  235976 ttggcgttcttcttccatcccgaatcaccaccgtgacatgttaaccatcaatttcccactcatcaaattcccactcaacattggttccatc 235886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 230010 - 229858
Alignment:
Q  101 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 200  Q
    ||||||||||||||  || | ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  230010 tgaatctgatatcgtgacgaatcgacaacgaaatcgatatcattcgcttccgatcaatctgttccaattggcgttcttcttccatcccaaatcaccaccg 229911  T
Q  201 taacattttaaccatcaaattcccactcatcaaattcccgctcaacattgatt 253  Q
    | |||| ||||||||||||||||||| | || ||| ||| |||||||||||||    
T  229910 tgacatgttaaccatcaaattcccacccttccaatccccactcaacattgatt 229858  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 250568 - 250701
Alignment:
Q  76 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgtt 175  Q
    ||||||||||| ||| | || ||| |||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||    
T  250568 tggtctgaacttccaaacgaccttttgaatctgatatcgcaactattcgacaacaaaatcgatctcaatagcttccgatcaatatgttccaattggcgtt 250667  T
Q  176 cttcttccattccaaatcaccaccgtaacatttt 209  Q
    || ||||||| |||||||| ||||||||||||||    
T  250668 ctgcttccatcccaaatcagcaccgtaacatttt 250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 4440773 - 4440661
Alignment:
Q  71 cagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattg 170  Q
    |||||||||||  ||| ||| ||||||||||  |||||||||| |||| | |||||   ||| ||||||||||||| |||||||||| |||| |||  ||    
T  4440773 cagactggtcttcactcccaaaggagcttctacatctgatatcccaacgactcgacgttgaactcgatctcattcgtttccgatcaacttgttccacatg 4440674  T
Q  171 gcgttcttcttcc 183  Q
    ||| |||||||||    
T  4440673 gcgctcttcttcc 4440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 8813717 - 8813752
Alignment:
Q  245 acattgattccatcacaaataaaactccattctctg 280  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8813717 acattgattccatcacaaacaaaactccattctctg 8813752  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 9341699 - 9341533
Alignment:
Q  66 ggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacc 165  Q
    ||||||| |||||||| |||| ||| |||| || || | |||||||||||||| | | |||| |||||||||||||||||| || ||||| |||||| ||    
T  9341699 ggaggcaaactggtctcaactcccaaaggatctactcactctgatatcgcaacgaattgacaccgaaatcgatctcattcgatttcgatccatttgttcc 9341600  T
Q  166 aattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaat 235  Q
    |||||||||||||| ||||| |||||||||||   |||||| ||| || |||||||||||||| ||||||    
T  9341599 aattggcgttcttcctccatcccaaatcacca---taacatcttacccttcaaattcccactcctcaaat 9341533  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 9403159 - 9403059
Alignment:
Q  94 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 193  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| | |||||    
T  9403159 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcttcttccatccgaaatc 9403060  T
Q  194 a 194  Q
    |    
T  9403059 a 9403059  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 9370567 - 9370461
Alignment:
Q  122 tcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaatt 221  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||||||||||||||| | | | | || | ||||||||||    
T  9370567 tcgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatcttcaaacttcacccatcaaatt 9370468  T
Q  222 cccactc 228  Q
    |||||||    
T  9370467 cccactc 9370461  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 9421398 - 9421298
Alignment:
Q  94 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 193  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||||| | |||||    
T  9421398 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcatcttccatccgaaatc 9421299  T
Q  194 a 194  Q
    |    
T  9421298 a 9421298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 9348911 - 9348838
Alignment:
Q  124 gacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcacca 197  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||    
T  9348911 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcacca 9348838  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 9344803 - 9344639
Alignment:
Q  70 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 169  Q
    ||||| ||||||||||| ||| |||| ||||| ||||| ||||||||||   ||||||| ||| | |||||||||||||| |||||  ||||| ||||||    
T  9344803 gcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttccaatt 9344704  T
Q  170 ggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 237  Q
    |||  ||||||||||| || ||||| ||   |||||||||| || | || ||||||||| ||||||||    
T  9344703 ggcactcttcttccatccccaatcatca---taacattttaccctttaagttcccactcctcaaattc 9344639  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 9494028 - 9494165
Alignment:
Q  101 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 200  Q
    ||||||||||||| ||   | ||||||  |||||||||||||||||||| |||||| | |||  ||||||||| ||||||||||||| ||| ||||| |     
T  9494028 tgaatctgatatcacagggaatcgacactgaaatcgatctcattcgctttcgatcagtctgttgcaattggcgctcttcttccattcgaaagcaccatct 9494127  T
Q  201 taacattttaaccatcaaattcccactcatcaaattcc 238  Q
    |||||||||| || || |||| |||||| |||||||||    
T  9494128 taacattttacccttcgaatttccactcttcaaattcc 9494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 9625696 - 9625803
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||| |||||||||||| || ||| |||||||| ||||| |||| ||||||  | | |||| ||||||||||||||| ||||| |||||  ||||| |||    
T  9625696 gaggtagactggtctgatctcccaaaggagcttttgaatatgatttcgcaaagaattgacatcgaaatcgatctcatacgctttcgatctgtttgttcca 9625795  T
Q  167 attggcgt 174  Q
    ||||||||    
T  9625796 attggcgt 9625803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 9433795 - 9433723
Alignment:
Q  107 tgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttc 179  Q
    |||| ||||||| | ||||||  ||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  9433795 tgatttcgcaacgaatcgacactgaaattgatctcattcgcttccgatcagtttgttcccattggcgttcttc 9433723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 9645575 - 9645691
Alignment:
Q  56 ccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 155  Q
    |||||| || |||||||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| ||||||| || | |||||||| |||||    
T  9645575 ccatggcggcggaggcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcaatatgattcgctttcgatc 9645674  T
Q  156 aatttgtaccaattggc 172  Q
      ||||| |||||||||    
T  9645675 ggtttgttccaattggc 9645691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 9654582 - 9654686
Alignment:
Q  70 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 169  Q
    |||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| |||||||||| | |||||||| |||||  ||||| ||||||    
T  9654582 gcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcgatatgattcgctttcgatcggtttgttccaatt 9654681  T
Q  170 ggcgt 174  Q
    |||||    
T  9654682 ggcgt 9654686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 9449259 - 9449095
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||| ||||| |||    ||||||| ||| ||||||||||||| || |||||| ||||| |||    
T  9449259 gaggcagattggtctcaactcccaaaggaacttctcaatctcatatcacaaaggctcgacaatgaactcgatctcattcgttttcgatcagtttgttcca 9449160  T
Q  167 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 237  Q
     ||||   |   ||||||| |||||||| ||   |||||||||| || |||||||||||||| ||||||||    
T  9449159 tttgg---tgcacttccatcccaaatcatca---taacattttacccttcaaattcccactcctcaaattc 9449095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 9441015 - 9441076
Alignment:
Q  94 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 155  Q
    |||||||| |||||||||||||||| | ||||| | ||| ||||||||||||| || |||||    
T  9441015 gagcttctaaatctgatatcgcaacgaatcgacgatgaactcgatctcattcgttttcgatc 9441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 9613061 - 9613218
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||| ||||||||||||||| ||  | || ||||||||||| ||||| |||    | ||||||||| |||| || ||||  || |||||||||||| | |    
T  9613061 gaggtagactggtctgaacttcctaaagaacttctgaatctcatatcacaatgcattgacaacgaactcgaccttattcattttcgatcaatttgttcaa 9613160  T
Q  167 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattccc 224  Q
      ||||| ||||| ||||| |||||||||||  ||||||| | | || ||||||||||    
T  9613161 cgtggcgctcttcctccatcccaaatcaccatagtaacatctcatccttcaaattccc 9613218  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 20693476 - 20693599
Alignment:
Q  74 actggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcg 173  Q
    ||||||||||||||||  |||| |||||||||||||||||  ||||  |||||| |||| |||||||||||||||| |||||| ||||| ||||||||||    
T  20693476 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 20693575  T
Q  174 ttcttcttccattccaaatcacca 197  Q
    |||||| ||||| |||||||||||    
T  20693576 ttcttcctccatcccaaatcacca 20693599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 18571957 - 18571864
Alignment:
Q  134 tcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccact 227  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||| ||||| |||||||| ||   |||||||||| || |||||||||||||    
T  18571957 tcgatctcattcgcttccgattggtttgtcccaaatggcgttcttcctccatcccaaatcatcattctaacattttacccttcaaattcccact 18571864  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 20300 - 20427
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  20300 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 20399  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    ||||||  |||||||| | |||||||||    
T  20400 attggcactcttcttcaactccaaatca 20427  T

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Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 20571 - 20444
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  20571 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 20472  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    |||| |  |||||||| |||||||||||    
T  20471 attgacactcttcttctattccaaatca 20444  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 28177306 - 28177179
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || ||||   || || |||    
T  28177306 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatatgttcgttcca 28177207  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    |||| |  ||||||||||||||||||||    
T  28177206 attgacactcttcttccattccaaatca 28177179  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 28219802 - 28219929
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  28219802 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 28219901  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    ||||||  |||||||| | |||||||||    
T  28219902 attggcactcttcttcaactccaaatca 28219929  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 7053047 - 7052957
Alignment:
Q  72 agactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 162  Q
    |||||||||| |||| |||  ||||||||| ||||||||||| |||| | | ||| | ||||||||| |||||||||||||||||| ||||    
T  7053047 agactggtctaaactcccaacggagcttctcaatctgatatcacaacgaattgacgatgaaatcgatttcattcgcttccgatcaacttgt 7052957  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 28177035 - 28177162
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||| | | || ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||| | || |||||  ||||| |||    
T  28177035 gaggcagattggtatcagcttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatttgttttcgatctgtttgttcca 28177134  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    ||||||  |||||||| | |||||||||    
T  28177135 attggcactcttcttcaactccaaatca 28177162  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 28220073 - 28219946
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  28220073 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 28219974  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    |||| |  |||||||| |||||||||||    
T  28219973 attgacactcttcttctattccaaatca 28219946  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 7026704 - 7026618
Alignment:
Q  76 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 162  Q
    |||||| |||| |||  ||||||||| |||||||||||||||| | || || | ||| |||||||||||| |||||||||| |||||    
T  7026704 tggtctaaactcccaacggagcttctcaatctgatatcgcaacgaatctacgaagaagtcgatctcattcacttccgatcagtttgt 7026618  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 28133179 - 28133077
Alignment:
Q  92 aggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaa 191  Q
    |||| ||||| ||||||||||| |||| | ||| ||| ||| |||||| |||||| ||  ||||| |||||  ||||||||  |||||||||||||||||    
T  28133179 aggatcttctcaatctgatatcacaacgactcggcaatgaactcgatcacattcgtttttgatcagtttgtttcaattggcactcttcttccattccaaa 28133080  T
Q  192 tca 194  Q
    |||    
T  28133079 tca 28133077  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 28132933 - 28133060
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  28132933 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 28133032  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    ||| | | |||||||| | |||||||||    
T  28133033 atttgagctcttcttcaactccaaatca 28133060  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 7042423 - 7042334
Alignment:
Q  73 gactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 162  Q
    ||||||||| |||| |||  ||||||||| ||||||||||| |||| | |||| || ||| | ||||||||||| || | ||||||||||    
T  7042423 gactggtctaaacttccaacggagcttctcaatctgatatcacaacgaatcgataatgaagttgatctcattcgatttcaatcaatttgt 7042334  T

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Target: scaffold0455 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 10839 - 10966
Alignment:
Q  67 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 166  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  10839 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 10938  T
Q  167 attggcgttcttcttccattccaaatca 194  Q
    ||| | | |||||||| | |||||||||    
T  10939 atttgagctcttcttcaactccaaatca 10966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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