View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_29 (Length: 267)
Name: NF17721_low_29
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_29 |
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| [»] chr4 (6 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 81 - 267
Target Start/End: Original strand, 51206641 - 51206827
Alignment:
| Q |
81 |
tgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgacactgcaattgtccccaaagatcatctccataattttggta |
180 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
51206641 |
tgttggttttactgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgacaccgcaattgtccccaaagatcatctccattattttggta |
51206740 |
T |
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| Q |
181 |
agaagcccctttcaaaatgtacttattttgatattttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
267 |
Q |
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| T |
51206741 |
agaagcccctttcaaaatgtacttattttgatattttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
51206827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 81 - 264
Target Start/End: Original strand, 43429075 - 43429259
Alignment:
| Q |
81 |
tgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggt |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
43429075 |
tgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggt |
43429174 |
T |
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| Q |
180 |
aagaagcccctttcaaaatgtacttattttgatattttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcat |
264 |
Q |
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| T |
43429175 |
aagaagcccctttcaaaatgtacttattttgatcttttttgtgttcatgtttatggtgcatttgttttgatctttttgtgctcat |
43429259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 21438620 - 21438467
Alignment:
| Q |
113 |
ggcatgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgtacttattttga |
211 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
21438620 |
ggcatgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgtatttgttttga |
21438521 |
T |
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| Q |
212 |
tattttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
267 |
Q |
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| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21438520 |
t-ctttctgtgctcatgtttatggtgcacttg-tttgatctttttgtgctcatatt |
21438467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 43429247 - 43429299
Alignment:
| Q |
215 |
tttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
267 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43429247 |
tttttgtgctcatgtttatggtgcatttgttttgatctttttgtgctcatatt |
43429299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 43429012 - 43429044
Alignment:
| Q |
17 |
atgatattgggtttatatatgggtgtgtattag |
49 |
Q |
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| T |
43429012 |
atgatattgggtttatatatgggtgtgtattag |
43429044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 51206580 - 51206612
Alignment:
| Q |
17 |
atgatattgggtttatatatgggtgtgtattag |
49 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
51206580 |
atgatattaggtttatatatgggtgtgtattag |
51206612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 6257222 - 6257035
Alignment:
| Q |
81 |
tgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggt |
179 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |
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| T |
6257222 |
tgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgacagccgcaactgtccccaaagatcatctccataattttggt |
6257123 |
T |
|
| Q |
180 |
aagaagcccctttcaaaatgtacttattttgatattttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
267 |
Q |
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|| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6257122 |
aaaaagtccctttcaaaatgtacttattttgatcttttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
6257035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 12329002 - 12328933
Alignment:
| Q |
116 |
atgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggtaagaa |
184 |
Q |
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|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12329002 |
atgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaa |
12328933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 12328927 - 12328882
Alignment:
| Q |
215 |
tttttgtgctcatgtttatggtgcacttgttttgatctttttgtgc |
260 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
12328927 |
tttttgtgctcatgtttatggtgtacttattttgatctttttgtgc |
12328882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6257281 - 6257249
Alignment:
| Q |
17 |
atgatattgggtttatatatgggtgtgtattag |
49 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6257281 |
atgatattgggtttatatatgggtgtgtattag |
6257249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 267
Target Start/End: Original strand, 54523067 - 54523221
Alignment:
| Q |
113 |
ggcatgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgtacttattttga |
211 |
Q |
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|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
54523067 |
ggcatgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgtatttgttttga |
54523166 |
T |
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| Q |
212 |
tattttttgtgctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
267 |
Q |
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| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54523167 |
t-ctttttgtcctcatgtttatggtgcacttgttttgatctttttgtgctcatatt |
54523221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 4437013 - 4437082
Alignment:
| Q |
116 |
atgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggtaagaa |
184 |
Q |
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|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4437013 |
atgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaa |
4437082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 25668811 - 25668880
Alignment:
| Q |
116 |
atgcggtgagtatgtgcatcatgaca-ctgcaattgtccccaaagatcatctccataattttggtaagaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25668811 |
atgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaa |
25668880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 4437088 - 4437133
Alignment:
| Q |
215 |
tttttgtgctcatgtttatggtgcacttgttttgatctttttgtgc |
260 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
4437088 |
tttttgtgctcatgtttatggtgtacttattttgatctttttgtgc |
4437133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 25668886 - 25668931
Alignment:
| Q |
215 |
tttttgtgctcatgtttatggtgcacttgttttgatctttttgtgc |
260 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
25668886 |
tttttgtgctcatgtttatggtgtacttattttgatctttttgtgc |
25668931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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