View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_3 (Length: 616)
Name: NF17721_low_3
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Complemental strand, 16708844 - 16708261
Alignment:
| Q |
18 |
attggtgatgtttgttgggttggttcaattgattagatggtttgcggtgaaatcaggggacggtgttgttgttggaggagggtttggtgggttttcggag |
117 |
Q |
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| T |
16708844 |
attggtgatggttgttgggttggttcagttgattagatggtttgcggtgaaatcaggggacggtgttgttgttggaggagggtttggtgggttttcggag |
16708745 |
T |
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| Q |
118 |
tatgaggacaggatttccgagatggagggtttgttgaagaagacggcgaagatgatgcaggtgcaggttgatgttgtggataagaagattgggaatgagg |
217 |
Q |
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| T |
16708744 |
tatgaggacaggatttccgagatggagggtttgttgaagaagacggcgaagatgatgcaggtgcaggttgatgttgtggataagaagattgggaatgagg |
16708645 |
T |
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| Q |
218 |
ttggtgggttaaagaaagaaatggatgcgaaaattgagcaaaaaggcgcgttcttggagaatgagataaagaaattggcgaataagggggataaattgga |
317 |
Q |
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| T |
16708644 |
ttggggggttaaagaaagaaatggatgcgaaaattgagcaaaaaggcgcgttcttggagaatgagataaagaaattggcgaataagggggataaattgga |
16708545 |
T |
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| Q |
318 |
gaggtatttggaggaattgaaggtggaggatttgttaacaaaggaggagtttgagaaatttgtcgagggtttgaagaatgtgaaggggaatgggtatgag |
417 |
Q |
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| T |
16708544 |
gaggtatttggaggaattgaaggtggaggatttgttaacgaaggaggagtttgagaaatttgtcgagggtttgaagaatgtgaaggggaatgggtatgag |
16708445 |
T |
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| Q |
418 |
ggcggtggtttggatgagataagggagtttgctagaggggtggttgagagcggaattgagaagcatgctgctgatgggcttgggagggtggattatgctc |
517 |
Q |
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| T |
16708444 |
ggcggtggtttggatgagataagggagtttgctagaggggtggttgagagcgaaattgagaagcatgctgctgatgggcttgggagggtggattatgctc |
16708345 |
T |
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| Q |
518 |
ttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaattggttcttgttgaatgctagaa |
601 |
Q |
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| T |
16708344 |
ttgcaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaattggttcttgttgaatgctagaa |
16708261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 481 - 594
Target Start/End: Original strand, 40316612 - 40316725
Alignment:
| Q |
481 |
catgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaatt |
580 |
Q |
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| T |
40316612 |
catgctgttgatgggcttgggagggtggattatgctattgaaaacggtggagcttttgttgtgagacattcggaggcttatgatgtgtggttggggaatt |
40316711 |
T |
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| Q |
581 |
ggttcttgttgaat |
594 |
Q |
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| T |
40316712 |
ggttcttgttgaat |
40316725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 481 - 594
Target Start/End: Original strand, 40326686 - 40326799
Alignment:
| Q |
481 |
catgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaatt |
580 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||||| | |||||||| |
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| T |
40326686 |
catgctgttgatgggcttgggagggtggattatgctattgaaaacggtggagcttttgttgtgagacattcggaggcttatgatgtgtggttggggaatt |
40326785 |
T |
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| Q |
581 |
ggttcttgttgaat |
594 |
Q |
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| T |
40326786 |
ggttcttgttgaat |
40326799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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