View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_30 (Length: 266)
Name: NF17721_low_30
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 51482595 - 51482833
Alignment:
| Q |
18 |
atttattgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaaggtc |
117 |
Q |
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| T |
51482595 |
atttattgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaaggtc |
51482694 |
T |
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| Q |
118 |
ataagtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagcagat |
217 |
Q |
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| T |
51482695 |
ataggtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtacttcaatggagttatctgatcagagccacccactgcagcagat |
51482794 |
T |
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| Q |
218 |
aacagcagtgctggcttgccggaactcctagattctgtg |
256 |
Q |
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| T |
51482795 |
aacagcagtgctggcttgccggaactcctagattctgtg |
51482833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 51467691 - 51467921
Alignment:
| Q |
24 |
tgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaaggtcataagt |
123 |
Q |
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| T |
51467691 |
tgataccttcatctgcactaaattggccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttatatctgagatgtaaaggtcataggt |
51467790 |
T |
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| Q |
124 |
cattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagcagataacagc |
223 |
Q |
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| T |
51467791 |
cattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagcagataacaac |
51467890 |
T |
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| Q |
224 |
agtgctggcttgccggaactcctagattctg |
254 |
Q |
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| T |
51467891 |
agttccggcttgtcggaactcctagactctg |
51467921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 48424109 - 48424334
Alignment:
| Q |
24 |
tgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaaggtcataagt |
123 |
Q |
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| T |
48424109 |
tgataccttcatctacactgaattggcctgttgggtttttcaaaggagcaggtggttgtgtttgagtttgatacctatctgagatgaaaaggtcataagt |
48424208 |
T |
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| Q |
124 |
cattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagcagataacagc |
223 |
Q |
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||||||||| |||||||||||||||||||||| ||| ||||| |||||||||| | | | |||||||||||||||||||| ||||||||||||||| |
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| T |
48424209 |
cattacattgacccaatccaagttgtttgcaatatcctgacctgggtagtattccaaagagatgatctgatcagagccacccacggcagcagataacagc |
48424308 |
T |
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| Q |
224 |
agtgctggcttgccggaactcctaga |
249 |
Q |
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|||| |||||||| ||||| ||||| |
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| T |
48424309 |
agtgtcggcttgccagaactgctaga |
48424334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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