View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_32 (Length: 261)
Name: NF17721_low_32
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46604045 - 46603782
Alignment:
| Q |
1 |
ataaaatactgatatgttcttatcgactcgatgattagtttcattataaatttaaagagcctaattatgatacgtgttagnnnnnnnn--tggtgagaac |
98 |
Q |
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| T |
46604045 |
ataaaatactaatatgtccttgtcgactcgatgattagtttcattataaatttaaagagcctaattatgatatgtgttagaaaaaaaaaatggtgaaaac |
46603946 |
T |
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| Q |
99 |
acatacttaattataaagtcctcaccaa-tcatgcatatgtgaatcgcaagtgcaaaaataaaatcaagagagaccagaccagagcactcactgaatgac |
197 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46603945 |
acatacttaattataaagtcctcaccaaatcatgcatatgtgaatcgcaagtgcaaaaataaaatcaagagagaccagaccagagcactcactgaatcac |
46603846 |
T |
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| Q |
198 |
actgttaagtggacggtaggcagtataattaaactatgcagaagtagtagcagttgactatttt |
261 |
Q |
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| T |
46603845 |
agtgttaagtggacggtaggcagtataattaaactatgcagaagtagtagcagttgactatttt |
46603782 |
T |
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