View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_36 (Length: 247)
Name: NF17721_low_36
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_36 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 30219711 - 30219892
Alignment:
| Q |
51 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219711 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
30219810 |
T |
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| Q |
151 |
gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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| T |
30219811 |
gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttccttcctatcaatccacgtttctcct |
30219892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 30049253 - 30049072
Alignment:
| Q |
51 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
30049253 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgtttttgcctttttg |
30049154 |
T |
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| Q |
151 |
gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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| T |
30049153 |
gaattagctattccatttgataattcattagctatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcct |
30049072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 30063594 - 30063413
Alignment:
| Q |
51 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
30063594 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgtttttgcctttttg |
30063495 |
T |
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| Q |
151 |
gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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| T |
30063494 |
gaattagctattccatttgataattcattagctatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcct |
30063413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 30033153 - 30032972
Alignment:
| Q |
51 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
150 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
30033153 |
cataatggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctg |
30033054 |
T |
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| Q |
151 |
gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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|| || ||||||||| ||||| |||||| ||| |||||||| |||||||||||| |||||||||| ||||| ||||||| |
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| T |
30033053 |
gagtttgctattccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcct |
30032972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 30229364 - 30229183
Alignment:
| Q |
51 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
150 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
30229364 |
cataatggacaaattctttggagaagttcaagagccagtgagtcctcatggacaatatttcaacagctctgtgatgtgttcatatgtttttggctttctg |
30229265 |
T |
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| Q |
151 |
gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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| T |
30229264 |
gaattagcgattccatttgataattcattagctatacctttgctcaaagatgttttcatccctatcaacccacgcttctcct |
30229183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 30264932 - 30264782
Alignment:
| Q |
82 |
gagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaa |
181 |
Q |
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|||||||| |||||| ||||||||||||||| | | || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
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| T |
30264932 |
gagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaag |
30264833 |
T |
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| Q |
182 |
ctatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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| T |
30264832 |
ctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcct |
30264782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 30287256 - 30287406
Alignment:
| Q |
82 |
gagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaa |
181 |
Q |
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|||||||| |||||| ||||||||||||||| | | || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
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| T |
30287256 |
gagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaag |
30287355 |
T |
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| Q |
182 |
ctatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcct |
232 |
Q |
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||||| |||| | || || | ||| | |||||||||||||| ||||||| |
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| T |
30287356 |
ctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcct |
30287406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 30271814 - 30271707
Alignment:
| Q |
125 |
tatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacg |
224 |
Q |
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|||||||||||||||| || ||| |||||| | |||||||||||||| || ||||||||| |||| | || |||||||| | |||||||||||||| |
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| T |
30271814 |
tatgttcatatgttttcggatttttggaatcacaaattccaattgatgattctcaaactatgtatttgttccaacatgtcttcttacctatcaatccacg |
30271715 |
T |
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| Q |
225 |
tttctcct |
232 |
Q |
| |
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|||||||| |
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| T |
30271714 |
tttctcct |
30271707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 13768 - 13845
Alignment:
| Q |
96 |
acatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatga |
173 |
Q |
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|||||||||||||||||| |||||||| |||||| ||| ||||||||| ||||||||||||||||| |||||| |||| |
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| T |
13768 |
acatggacaatatttcaacagctctgtaatatgtgcatttgtttttggctttctggaattagctataccaatttatga |
13845 |
T |
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