View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17721_low_4 (Length: 572)
Name: NF17721_low_4
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 6969726 - 6970234
Alignment:
| Q |
1 |
caaatttcccttcagtatatttggctccaaactttgtagccaattcaaccttctctctaactcctcctttcaaagcctgtccaccatttcacacatacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6969726 |
caaatttcccttcagtatatttggctccaaactttgtagccaattcaaccttctctctaactcctcctttcaaagcctgtccacaatttcacacatacac |
6969825 |
T |
|
| Q |
101 |
atttcatcacatttctactatgctacgcaaaggttacaaagtcacttagctcgacgctaggcaataactttgt-tagtatatttgtatttcaaaactcat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
6969826 |
atttcatcacatttctactatgctacgcaaaggttacaaagtcacttagctcgacgctaggcaataactttgtgtagtatatttgtatttcaaaactcat |
6969925 |
T |
|
| Q |
200 |
catcaattaaaagttcatttcatatagatcatgtcaaaatcaattgtagttatcgcaaaactaaatgaaagcgaagagaaagtggtaacctttccaagaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6969926 |
catcaattaaaagttcatttcatatagatcatgtcaaaatcaattgtagttatcgcaaaactaaatgaaagcgaagagaaagtggtaacctttccaagaa |
6970025 |
T |
|
| Q |
300 |
ggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtggatgagagcaatcatgtcagtttgagg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970026 |
ggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtggatgagagcaatcatgtcagtttgagg |
6970125 |
T |
|
| Q |
400 |
tttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgttgcc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970126 |
tttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgttgcc |
6970225 |
T |
|
| Q |
500 |
attgttctt |
508 |
Q |
| |
|
||||||||| |
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|
| T |
6970226 |
attgttctt |
6970234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 265 - 493
Target Start/End: Complemental strand, 6918192 - 6917964
Alignment:
| Q |
265 |
tgaaagcgaagagaaagtggtaacctttccaagaaggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| |
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|
| T |
6918192 |
tgaaagcgaagagaaagtggtaacctttccaagaagaacttcattggtgtgaggtccatagaagtcagaagtatcaagaaaagtgacaccagattgtatg |
6918093 |
T |
|
| Q |
365 |
gcatggtggatgagagcaatcatgtcagtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgc |
464 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
6918092 |
gcatggtgaatgagagcaatcatgtcaggttcaggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatgc |
6917993 |
T |
|
| Q |
465 |
cttgtgatcctaacttcattcttcctact |
493 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
6917992 |
cttgtgatcctaacttcattcttcctact |
6917964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 273 - 503
Target Start/End: Original strand, 6922673 - 6922903
Alignment:
| Q |
273 |
aagagaaagtggtaacctttccaagaaggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| |
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|
| T |
6922673 |
aagagaaagtggtaacctttccaagaagaacttcattggtgtgagggccataaatgtcagaagtgtcaagaaaagtgacaccagattgtatagcatggtg |
6922772 |
T |
|
| Q |
373 |
gatgagagcaatcatgtcagtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgat |
472 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
6922773 |
gatgagagaaatcatatcaggttcaggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatcccttgtgat |
6922872 |
T |
|
| Q |
473 |
cctaacttcattcttcctactgttgccattg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6922873 |
cctaacttcattcttcctactgttgccattg |
6922903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 273 - 503
Target Start/End: Complemental strand, 6955539 - 6955309
Alignment:
| Q |
273 |
aagagaaagtggtaacctttccaagaaggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| |
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|
| T |
6955539 |
aagagaaagtggtaacctttccaagaagaacttcattggtgtgagggccataaatgtcagaagtgtcaagaaaagtgacaccagattgtatagcatggtg |
6955440 |
T |
|
| Q |
373 |
gatgagagcaatcatgtcagtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgat |
472 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
6955439 |
gatgagagaaatcatatcaggttcaggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatcccttgtgat |
6955340 |
T |
|
| Q |
473 |
cctaacttcattcttcctactgttgccattg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
6955339 |
cctaacttcattcttcctactgttgccattg |
6955309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 279 - 505
Target Start/End: Original strand, 6918496 - 6918722
Alignment:
| Q |
279 |
aagtggtaacctttccaagaaggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtggatgag |
378 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6918496 |
aagtggtaacctttccaagaagaacttcattggtgtgagggccataaatatcagaagtgtcaagaaaagtgacaccagattgtatagcatggtggatgag |
6918595 |
T |
|
| Q |
379 |
agcaatcatgtcagtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaac |
478 |
Q |
| |
|
|| |||||| |||| || ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6918596 |
agaaatcatatcagattcaggcttaggaggaccatagaaagctgacatgctcatgcaaccaagtccttgtaaggatacttccatcccttgtgatcctaac |
6918695 |
T |
|
| Q |
479 |
ttcattcttcctactgttgccattgtt |
505 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6918696 |
ttcattcttcctactgttgccattgtt |
6918722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 279 - 505
Target Start/End: Complemental strand, 6923651 - 6923425
Alignment:
| Q |
279 |
aagtggtaacctttccaagaaggagttcgttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtggatgag |
378 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6923651 |
aagtggtaacctttccaagaagaacttcattggtgtgaggaccataaatatcagaagtgtcaagaaaagtgacaccagattgtatagcatggtggatgag |
6923552 |
T |
|
| Q |
379 |
agcaatcatgtcagtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaac |
478 |
Q |
| |
|
|| |||||| |||| || ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6923551 |
agaaatcatatcagattcaggcttaggaggaccatagaaagctgacatgctcatgcaaccaagtccttgtaaggatacttccatcccttgtgatcctaac |
6923452 |
T |
|
| Q |
479 |
ttcattcttcctactgttgccattgtt |
505 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6923451 |
ttcattcttcctactgttgccattgtt |
6923425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 308 - 503
Target Start/End: Original strand, 6923678 - 6923873
Alignment:
| Q |
308 |
ttggtgtgagggccatatatgtcagaggtatcaagaaaagtgacaccagattgtatggcatggtggatgagagcaatcatgtcagtttgaggtttaggag |
407 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |
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|
| T |
6923678 |
ttggtgtgaggtccatagaagtcagaagtatcaagaaaagtgacaccagattgtatggcatggtgaatgagagcaatcatgtcaggttcaggtttaggag |
6923777 |
T |
|
| Q |
408 |
ggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgttgccattg |
503 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
6923778 |
gaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatgccttgtgatcctaacttcattcttcctacttttgtcattg |
6923873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 6970262 - 6970312
Alignment:
| Q |
506 |
cttctatcctagtactatgtataaaggccaaacaaaattgaagttgtgaat |
556 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6970262 |
cttctatcctaggactatgtataaaggccaaacaaaattgaagttgtgaat |
6970312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 6918314 - 6918351
Alignment:
| Q |
25 |
ctccaaactttgtagccaattcaaccttctctctaact |
62 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6918314 |
ctccaaattttgtagccaattcaactttctctctaact |
6918351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 6922493 - 6922526
Alignment:
| Q |
25 |
ctccaaactttgtagccaattcaaccttctctct |
58 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
6922493 |
ctccaaacttagtagccaattcaaccttctctct |
6922526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 6955719 - 6955686
Alignment:
| Q |
25 |
ctccaaactttgtagccaattcaaccttctctct |
58 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
6955719 |
ctccaaacttagtagccaattcaaccttctctct |
6955686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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