View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_42 (Length: 236)
Name: NF17721_low_42
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_42 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 46873545 - 46873767
Alignment:
| Q |
14 |
acacaaaaccaacaaagaaaagatagaacgcaacgaatccaacggcttgccatagaaaaatctcagcactaagataaacataaaacagaaacatagcagc |
113 |
Q |
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| T |
46873545 |
acacaaaaacaacaaagaaaagatagaacgcaacgaatccaacggcttgccatagaaaaatctcagcactaagataaacataaaacagaaacatagcagc |
46873644 |
T |
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| Q |
114 |
agttaagtagaacaacacatctctaacaaacggcgccggatcaacgggaaaaggagctgagtagatcgcgacaaagccgacaacaagagcagagacgaaa |
213 |
Q |
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| T |
46873645 |
agttaagtagaacaaaacatctctaacaaacggcgccggatcaacgggaaaaggagctgagtagatcgcgacaaagccgacaacaagagcagagacgaaa |
46873744 |
T |
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| Q |
214 |
gcaccggcggaaagtatagcgcc |
236 |
Q |
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| T |
46873745 |
gcaccggcggaaagtatagcgcc |
46873767 |
T |
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