View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17721_low_45 (Length: 211)

Name: NF17721_low_45
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17721_low_45
NF17721_low_45
[»] chr2 (2 HSPs)
chr2 (17-106)||(43869463-43869548)
chr2 (136-194)||(43869361-43869419)
[»] chr4 (2 HSPs)
chr4 (136-194)||(281365-281423)
chr4 (29-80)||(281447-281498)
[»] chr5 (1 HSPs)
chr5 (17-80)||(28015422-28015485)
[»] chr1 (1 HSPs)
chr1 (136-194)||(37670341-37670399)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 43869548 - 43869463
Alignment:
Q  17 aatatactccacattttaaccaatttcacaaattatcttttttcaaatatgaatagagtaataaataattgtataaaatatcttggcctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  43869548 aatatactccacattttaaccaatttcacaaattatcttttttcaaatatgaatagagta----ataattgtataaaatatcttggcctt 43869463  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 43869419 - 43869361
Alignment:
Q  136 gaattttactgagttttaaatggactcttaaatgtcaattaagttggaaacataaccct 194  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43869419 gaatttgactgagttttaaatggactcttaaatgtcaattaagttggaaacataaccct 43869361  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 281423 - 281365
Alignment:
Q  136 gaattttactgagttttaaatggactcttaaatgtcaattaagttggaaacataaccct 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  281423 gaattttactgagttttaaatggactcttaaatgtcaattaagttggaaacataaccct 281365  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 281498 - 281447
Alignment:
Q  29 attttaaccaatttcacaaattatcttttttcaaatatgaatagagtaataa 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  281498 attttaaccaatttcacaaattatcttttttcaaatatgaatagagtaataa 281447  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 28015422 - 28015485
Alignment:
Q  17 aatatactccacattttaaccaatttcacaaattatcttttttcaaatatgaatagagtaataa 80  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28015422 aatatactccatattttaaccaatttcacaaattatcttttttcaaacatgaatagagtaataa 28015485  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 37670341 - 37670399
Alignment:
Q  136 gaattttactgagttttaaatggactcttaaatgtcaattaagttggaaacataaccct 194  Q
    ||||||||||  ||||||||||| ||||||||||  ||||||||| || ||||||||||    
T  37670341 gaattttactaggttttaaatgggctcttaaatgcaaattaagttagagacataaccct 37670399  T

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