View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17721_low_47 (Length: 201)

Name: NF17721_low_47
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17721_low_47
NF17721_low_47
[»] chr8 (10 HSPs)
chr8 (1-185)||(37562189-37562371)
chr8 (107-157)||(35840530-35840580)
chr8 (116-185)||(13935025-13935094)
chr8 (109-157)||(35943076-35943124)
chr8 (109-176)||(40450967-40451034)
chr8 (107-145)||(35839720-35839758)
chr8 (109-167)||(43972076-43972134)
chr8 (123-155)||(12350656-12350688)
chr8 (109-157)||(35943839-35943887)
chr8 (104-164)||(43925011-43925071)
[»] chr1 (15 HSPs)
chr1 (109-185)||(38931314-38931390)
chr1 (109-176)||(41884210-41884277)
chr1 (109-167)||(31788266-31788324)
chr1 (116-185)||(38932100-38932169)
chr1 (109-157)||(48835097-48835145)
chr1 (109-155)||(2687729-2687775)
chr1 (109-155)||(43317118-43317164)
chr1 (109-157)||(4640528-4640576)
chr1 (109-157)||(4641762-4641810)
chr1 (109-157)||(42383720-42383768)
chr1 (109-149)||(48834366-48834406)
chr1 (107-157)||(36272547-36272597)
chr1 (109-155)||(50950897-50950943)
chr1 (109-157)||(45922232-45922280)
chr1 (109-157)||(45923131-45923179)
[»] chr3 (13 HSPs)
chr3 (109-185)||(51421647-51421723)
chr3 (106-185)||(51420858-51420937)
chr3 (109-155)||(33968181-33968227)
chr3 (109-157)||(33454866-33454914)
chr3 (109-157)||(33455781-33455829)
chr3 (109-157)||(44021286-44021333)
chr3 (109-157)||(49161808-49161856)
chr3 (108-176)||(55124413-55124481)
chr3 (109-164)||(8652810-8652865)
chr3 (109-167)||(8653710-8653768)
chr3 (109-157)||(53714416-53714464)
chr3 (108-146)||(31598148-31598186)
chr3 (115-157)||(31598794-31598836)
[»] chr2 (15 HSPs)
chr2 (109-176)||(36390957-36391024)
chr2 (109-176)||(7868122-7868189)
chr2 (109-157)||(34617653-34617701)
chr2 (116-164)||(41768736-41768784)
chr2 (109-156)||(23876064-23876111)
chr2 (109-167)||(4976495-4976553)
chr2 (109-167)||(4994402-4994460)
chr2 (114-155)||(15602822-15602863)
chr2 (109-157)||(24383062-24383111)
chr2 (114-167)||(36391662-36391715)
chr2 (109-157)||(2307073-2307121)
chr2 (116-156)||(5005469-5005509)
chr2 (109-157)||(6084871-6084919)
chr2 (108-156)||(8145385-8145433)
chr2 (109-157)||(11872080-11872128)
[»] chr4 (21 HSPs)
chr4 (109-167)||(232039-232097)
chr4 (109-157)||(25970106-25970154)
chr4 (123-164)||(6246798-6246839)
chr4 (109-157)||(34154794-34154842)
chr4 (109-157)||(33370875-33370923)
chr4 (109-157)||(34155626-34155674)
chr4 (107-147)||(47335690-47335730)
chr4 (110-157)||(6680342-6680389)
chr4 (110-157)||(36451427-36451474)
chr4 (109-151)||(39870271-39870313)
chr4 (109-157)||(231436-231484)
chr4 (109-157)||(3167478-3167525)
chr4 (109-165)||(23383310-23383366)
chr4 (109-157)||(37638672-37638720)
chr4 (109-157)||(38009284-38009332)
chr4 (109-157)||(39429937-39429985)
chr4 (109-157)||(39869515-39869563)
chr4 (109-157)||(41261122-41261170)
chr4 (109-157)||(47326789-47326837)
chr4 (109-157)||(47341585-47341633)
chr4 (116-156)||(55514355-55514395)
[»] chr7 (13 HSPs)
chr7 (109-157)||(29060739-29060787)
chr7 (109-157)||(42607081-42607129)
chr7 (109-157)||(12732247-12732295)
chr7 (109-152)||(6730162-6730205)
chr7 (109-157)||(24995852-24995900)
chr7 (108-156)||(35771260-35771308)
chr7 (115-157)||(24996683-24996725)
chr7 (106-163)||(35770271-35770328)
chr7 (116-157)||(44541708-44541749)
chr7 (109-157)||(5064645-5064693)
chr7 (109-157)||(32871140-32871188)
chr7 (109-157)||(40320410-40320458)
chr7 (109-157)||(42607812-42607860)
[»] chr6 (5 HSPs)
chr6 (109-155)||(25371169-25371215)
chr6 (109-157)||(16766015-16766063)
chr6 (109-151)||(8384024-8384066)
chr6 (108-157)||(16764924-16764973)
chr6 (109-157)||(25067850-25067898)
[»] chr5 (16 HSPs)
chr5 (109-175)||(16689593-16689659)
chr5 (110-167)||(26712378-26712435)
chr5 (110-167)||(26982116-26982173)
chr5 (109-157)||(6804891-6804939)
chr5 (110-157)||(4789521-4789568)
chr5 (109-155)||(4820454-4820500)
chr5 (116-164)||(6804826-6804874)
chr5 (106-157)||(35262449-35262500)
chr5 (109-157)||(6007654-6007702)
chr5 (116-156)||(9142054-9142094)
chr5 (109-157)||(21771274-21771322)
chr5 (109-165)||(26711568-26711624)
chr5 (109-165)||(26981305-26981361)
chr5 (109-157)||(32943517-32943565)
chr5 (109-157)||(36912246-36912293)
chr5 (109-157)||(42650757-42650805)
[»] scaffold2003 (1 HSPs)
scaffold2003 (109-176)||(512-579)
[»] scaffold0051 (1 HSPs)
scaffold0051 (110-155)||(15061-15106)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 37562189 - 37562371
Alignment:
Q  1 atagttgtacaaatatcatttctctagtgaataatattaaatatcttgtcagcactattttcaaagtttttagtatagtatatttacattgaagatgggg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||    
T  37562189 atagttgtacaaatatcatttctctagtgaataatgttaaatatcttgtcagcgctattttcaaagtttttagtagagtat--ttacattgaagatgggg 37562286  T
Q  101 atgtcaacggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatctacaatctt 185  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  37562287 atgtcaacggtggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagatctacaatctt 37562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 35840580 - 35840530
Alignment:
Q  107 acggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  35840580 acggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagt 35840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 13935094 - 13935025
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatctacaatctt 185  Q
    |||||||||||||||  || |||||| ||||||| ||||||||| ||||||| | |||||||||||||||    
T  13935094 tttagcatgggaaaggaaagttgttttccaccataggaaagtcacttttaaccattagatctacaatctt 13935025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 35943076 - 35943124
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  35943076 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaagt 35943124  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 40451034 - 40450967
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatc 176  Q
    |||||||||||| ||||||||   || |||||||||||||||||||||| ||||||||| | ||||||    
T  40451034 ggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaagtaaattttaaccattagatc 40450967  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 35839720 - 35839758
Alignment:
Q  107 acggtggggtttagcatgggaaagagaaattgtttccca 145  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  35839720 acggtggggtttagcatgggaaagggaagttgtttccca 35839758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 43972134 - 43972076
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||| ||||||| ||| ||| ||||| ||||||||||| |||||||||| |||||||||    
T  43972134 ggtgaggtttagtatgagaatgagaagttgtttcccactatgggaaagttaattttaac 43972076  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 12350688 - 12350656
Alignment:
Q  123 tgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||||||| ||||||||||||||||||||||||    
T  12350688 tgggaaagggaaattgtttcccaccatgggaaa 12350656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 35943887 - 35943839
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||   ||||||||||||| |||| |||||    
T  35943887 ggtggggtttagcatgggaaaggagaattgtttcccactatggaaaagt 35943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 43925071 - 43925011
Alignment:
Q  104 tcaacggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttt 164  Q
    |||||||||| |||||   |||||||| ||| ||||||||||||||| |||||| ||||||    
T  43925071 tcaacggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaatttt 43925011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 38931314 - 38931390
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatctacaatctt 185  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  38931314 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattagatctacaatctt 38931390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 41884277 - 41884210
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatc 176  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||  ||| |||||| ||||||    
T  41884277 ggtggggtttagcatggaaaagggaaattgtttcccaccataggaaagttgattctaactattagatc 41884210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 31788324 - 31788266
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||| ||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||    
T  31788324 ggtgaggtttagtatgggaatgagaagttgtttcccaccatgggaaagttaattttaac 31788266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 38932169 - 38932100
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatctacaatctt 185  Q
    ||||||||||||||  ||| |||||| ||||||| ||||||||| ||||||| | |||||||||||||||    
T  38932169 tttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagatctacaatctt 38932100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 48835145 - 48835097
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||||    
T  48835145 ggtggggtttagcatgggaaaggggaattgttttccaccatgggaaagt 48835097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 2687775 - 2687729
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||    
T  2687775 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaa 2687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 43317164 - 43317118
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||    
T  43317164 ggtggggtttagcatgggaatgagaagttgtttcccatcatgggaaa 43317118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 4640528 - 4640576
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||| ||||||||||| |||| | ||||||||||||||||||||||||    
T  4640528 ggtggagtttagcatggtaaaggggaattgtttcccaccatgggaaagt 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 4641810 - 4641762
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||| |||||||||||||||| | ||||||||||||||| ||||||||    
T  4641810 ggtggagtttagcatgggaaaggggaattgtttcccaccaagggaaagt 4641762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 42383720 - 42383768
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||| ||||||||||||| |||||||| | |||||||||||    
T  42383720 ggtggggtttagtatgggaaagagaagttgtttcctatcatgggaaagt 42383768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 48834366 - 48834406
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccat 149  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  48834366 ggtggggtttagcatgggaaagaaaaattgttttccaccat 48834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 36272597 - 36272547
Alignment:
Q  107 acggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||  ||||||||||||| | ||| ||||||||||||||||||||||    
T  36272597 acggtggcatttagcatgggaatgggaacttgtttcccaccatgggaaagt 36272547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 50950943 - 50950897
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||    
T  50950943 ggtggggtttagcatgggaatgggaagttgtttcccaccataggaaa 50950897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 45922232 - 45922280
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||| ||||| |||||||||| ||  ||||||||||||||||||||||    
T  45922232 ggtggagtttaacatgggaaagggaggttgtttcccaccatgggaaagt 45922280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 45923179 - 45923131
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||| |||||||||||||| || |||||||||| ||||||||| |||||    
T  45923179 ggtgaggtttagcatgggatagggaaattgttttccaccatggaaaagt 45923131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 51421723 - 51421647
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatctacaatctt 185  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||| | || ||||||||||||    
T  51421723 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattaaatctacaatctt 51421647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 51420858 - 51420937
Alignment:
Q  106 aacggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatctacaatctt 185  Q
    ||||||||  ||||||||||||||  ||| |||||| ||||||| ||||||||| ||||||| | |||||||||||||||    
T  51420858 aacggtggcatttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagatctacaatctt 51420937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 33968181 - 33968227
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  33968181 ggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaa 33968227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 33454866 - 33454914
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  33454866 ggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagt 33454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 33455829 - 33455781
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||    
T  33455829 ggtggggtttagcatgggaaaggggaattgtttcccaccataggaaagt 33455781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 44021286 - 44021333
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  44021286 ggtggggtttagcatgggaaaga-aagttgtttcccaccatgggaaagt 44021333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 49161856 - 49161808
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  49161856 ggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 49161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 55124413 - 55124481
Alignment:
Q  108 cggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatc 176  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||| | ||| || |||| ||||||    
T  55124413 cggtggggtttagcatgggaaagggaaagagtttcccaccatgggaaaataaatattgactattagatc 55124481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 8652810 - 8652865
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttt 164  Q
    |||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  8652810 ggtggggtttagcatgggaaaggggaatcggttcccaccatgggaaagtaaatttt 8652865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 8653768 - 8653710
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    ||||||||||||||||| |||| |  |||||||||||||||| |||||| |||||||||    
T  8653768 ggtggggtttagcatggaaaagggggattgtttcccaccatgagaaagtaaattttaac 8653710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 53714464 - 53714416
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||| |||||||||||||||| |||||| |||||||| ||||||||||    
T  53714464 ggtggagtttagcatgggaaagggaaattctttcccactatgggaaagt 53714416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 31598148 - 31598186
Alignment:
Q  108 cggtggggtttagcatgggaaagagaaattgtttcccac 146  Q
    |||||||||||||||||||||||| || |||||||||||    
T  31598148 cggtggggtttagcatgggaaagaaaagttgtttcccac 31598186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 31598836 - 31598794
Alignment:
Q  115 gtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||| ||||| || ||||||||||||||||||||||    
T  31598836 gtttagcatggaaaagaaaagttgtttcccaccatgggaaagt 31598794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 36390957 - 36391024
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatc 176  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| | ||||||    
T  36390957 ggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagatc 36391024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 7868189 - 7868122
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatc 176  Q
    |||||| ||||||||| ||||| | | |||||||||||||||||||||| ||||||||| ||||||||    
T  7868189 ggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaagtaaattttaaccactagatc 7868122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 34617653 - 34617701
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagt 34617701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 41768784 - 41768736
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttt 164  Q
    |||||||||||  || ||| |||||||||||||||||||||||||||||    
T  41768784 tttagcatgggtcagtgaagttgtttcccaccatgggaaagtcaatttt 41768736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 23876111 - 23876064
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaag 156  Q
    |||||||||||||||||||||  | | |||||||||||||||||||||    
T  23876111 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 23876064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 4976553 - 4976495
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||| ||||||| ||||| | ||||| ||||||||||| |||||||||| |||||||||    
T  4976553 ggtgaggtttagtatggggatgagaagttgtttcccactatgggaaagttaattttaac 4976495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 4994460 - 4994402
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||| ||||||| ||||| | ||||| ||||||||||| |||||||||| |||||||||    
T  4994460 ggtgaggtttagtatggggatgagaagttgtttcccactatgggaaagttaattttaac 4994402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 15602863 - 15602822
Alignment:
Q  114 ggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||||||||| |||||| ||| ||||||||||||||||||||    
T  15602863 ggtttagcataggaaagggaagttgtttcccaccatgggaaa 15602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 24383111 - 24383062
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgttt-cccaccatgggaaagt 157  Q
    |||||||||||| ||||||||| ||| |||||| ||||||||||||||||    
T  24383111 ggtggggtttagtatgggaaagggaagttgtttccccaccatgggaaagt 24383062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 36391715 - 36391662
Alignment:
Q  114 ggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    ||||||| ||||||||| | | |||||| ||||||||||||||| |||||||||    
T  36391715 ggtttagtatgggaaaggggagttgttttccaccatgggaaagtaaattttaac 36391662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 2307121 - 2307073
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||| ||||||||||||||||| ||| |||||| |||||||| ||||||    
T  2307121 ggtgaggtttagcatgggaaagggaagttgttttccaccatgagaaagt 2307073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 5005469 - 5005509
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaag 156  Q
    ||||||||||||||| | |||||||||||| ||||||||||    
T  5005469 tttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 6084871 - 6084919
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||| |||||| |||||||||| | |||||||||||| |||||||||||    
T  6084871 ggtgaggtttaacatgggaaaggggaattgtttcccatcatgggaaagt 6084919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 8145385 - 8145433
Alignment:
Q  108 cggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaag 156  Q
    ||||||||||||| ||||||| ||  | |||||||||||||||||||||    
T  8145385 cggtggggtttagaatgggaatgaagagttgtttcccaccatgggaaag 8145433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 11872080 - 11872128
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||| ||||||||| | || |||||||||| |||||||||||    
T  11872080 ggtggggtttaacatgggaaaaaaaagttgtttcccatcatgggaaagt 11872128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 232097 - 232039
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaac 232039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 25970106 - 25970154
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| | | ||||||||||||||||||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 6246798 - 6246839
Alignment:
Q  123 tgggaaagagaaattgtttcccaccatgggaaagtcaatttt 164  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  6246798 tgggaaagggaaattgtttcccaccatgggaaagttaatttt 6246839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 34154794 - 34154842
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaa-ttgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34154794 ggtggggtttagcatgggaaa-agaaacttgtttcccaccatgggaaagt 34154842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 33370923 - 33370875
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||   | ||||||||||||||||||||||    
T  33370923 ggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagt 33370875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 34155674 - 34155626
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| ||| |||||| ||||||||| |||||    
T  34155674 ggtggggtttagcatgggaaagggaacttgttttccaccatggaaaagt 34155626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 47335690 - 47335730
Alignment:
Q  107 acggtggggtttagcatgggaaagagaaattgtttcccacc 147  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  47335690 acggtggggtttagcatgggaaagaaaaattgattcccacc 47335730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 6680389 - 6680342
Alignment:
Q  110 gtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  6680389 gtggggtttagcatgggaaagggaaagagtttctcaccatgggaaagt 6680342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 36451474 - 36451427
Alignment:
Q  110 gtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  36451474 gtggggtttagcatgggaaagaggagttgtttctcaccatggaaaagt 36451427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 39870313 - 39870271
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgg 151  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  39870313 ggtggagtttagcatgggaaagaaaagttgtttcccaccatgg 39870271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 231436 - 231484
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||| ||||||||| ||| |||||| | |||||||||||||    
T  231436 ggtggggtttagtatgggaaagggaagttgttttctaccatgggaaagt 231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 3167525 - 3167478
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||||  | || |||||||||||||||||||    
T  3167525 ggtggggtttagcatgggaaagattactt-tttcccaccatgggaaagt 3167478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 23383310 - 23383366
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttta 165  Q
    |||||||||||| ||| |||||   | |||||||||||||||||||||| |||||||    
T  23383310 ggtggggtttagaatgagaaaggagagttgtttcccaccatgggaaagttaatttta 23383366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 37638672 - 37638720
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||||  | ||| |||||| |||||||||||    
T  37638672 ggtggggtttagcatgggaaagaccagttgcttcccatcatgggaaagt 37638720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 38009284 - 38009332
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||| |||||||||||||||   |||||||||||||||||| |||||    
T  38009284 ggtgggatttagcatgggaaaggataattgtttcccaccatggaaaagt 38009332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 39429985 - 39429937
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||| |   | ||||||||||||||||||||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgggaaagt 39429937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 39869515 - 39869563
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||| |||||| |||||||||| ||| || |||||||    
T  39869515 ggtggggtttagcatgagaaagaaaaattgtttctcactataggaaagt 39869563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 41261122 - 41261170
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||| |||||||||||||||||  || |||||| |||||||||||||||    
T  41261122 ggtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaagt 41261170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 47326837 - 47326789
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||| || |||||||||||||  || ||||||||||||||||||||||    
T  47326837 ggtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaagt 47326789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 47341633 - 47341585
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||| || |||||||||||||  || ||||||||||||||||||||||    
T  47341633 ggtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaagt 47341585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 55514395 - 55514355
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaag 156  Q
    |||||||||||||||  || |||||||||||||||||||||    
T  55514395 tttagcatgggaaaggaaagttgtttcccaccatgggaaag 55514355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 29060787 - 29060739
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  29060787 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 29060739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 42607081 - 42607129
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  42607081 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 12732247 - 12732295
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  12732247 ggtggggtttagcatgggaaagggaaagagtttcccaccatgggaaagt 12732295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 6730205 - 6730162
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatggg 152  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  6730205 ggtggggtttagcatgggaaagggaagttgtttcccaccatggg 6730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 24995852 - 24995900
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||| ||||||||| | | ||||||||||||||||||||||    
T  24995852 ggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaagt 24995900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 35771308 - 35771260
Alignment:
Q  108 cggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaag 156  Q
    ||||||||||||| |||||||||  || |||||||||||||||||||||    
T  35771308 cggtggggtttagtatgggaaagcaaagttgtttcccaccatgggaaag 35771260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 24996725 - 24996683
Alignment:
Q  115 gtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||| | | ||||||||||||||||||||||    
T  24996725 gtttagcatgggaaaggggagttgtttcccaccatgggaaagt 24996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 35770271 - 35770328
Alignment:
Q  106 aacggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattt 163  Q
    |||| |||||||||| ||| |||||  ||||||||||||||||||| ||||| |||||    
T  35770271 aacgttggggtttagtatgagaaagtaaaattgtttcccaccatggtaaagttaattt 35770328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 44541749 - 44541708
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||| | |||||||||| |||||||||||||    
T  44541749 tttagcatgggaaagtggaattgtttccgaccatgggaaagt 44541708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 5064693 - 5064645
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||| | ||| || ||||||| |||||||||||    
T  5064693 ggtggggtttagcatgggaatgggaagttctttcccatcatgggaaagt 5064645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 32871188 - 32871140
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||| | | | |||||||||||||| |||||||    
T  32871188 ggtggggtttagcatgggaatggggagttgtttcccaccataggaaagt 32871140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 40320458 - 40320410
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||   | |||||||||||||||| |||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagt 40320410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 42607860 - 42607812
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||| |||| | |||||||||||| ||| |||||||    
T  42607860 ggtggggtttagcatggaaaaggggaattgtttcccatcataggaaagt 42607812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 25371169 - 25371215
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  25371169 ggtggggtttagcatgggaaagtgaacttgtttcccaccatgggaaa 25371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 16766063 - 16766015
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||| || |||||| ||||||||| |||||    
T  16766063 ggtggggtttagcatgggaaagaaaagttgttttccaccatggaaaagt 16766015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 8384066 - 8384024
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgg 151  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  8384066 ggtggggtttagcatgggaaagtggagttgtttcccaccatgg 8384024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 16764924 - 16764973
Alignment:
Q  108 cggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||| ||||||||||||||||  || ||||||||||||||||| ||||    
T  16764924 cggtggagtttagcatgggaaaggaaagttgtttcccaccatggggaagt 16764973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 25067898 - 25067850
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||||   | |||||||||||||| |||||||    
T  25067898 ggtggggtttagcatgggaaaggatatttgtttcccaccataggaaagt 25067850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 16689593 - 16689659
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagat 175  Q
    |||||||||||| ||||||||| ||| || ||||||||||||| ||||| ||||||||||| |||||    
T  16689593 ggtggggtttagtatgggaaagggaagttctttcccaccatggaaaagtaaattttaactattagat 16689659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 26712435 - 26712378
Alignment:
Q  110 gtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  26712435 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaagctaattttaac 26712378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 26982173 - 26982116
Alignment:
Q  110 gtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaac 167  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  26982173 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaagctaattttaac 26982116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 6804891 - 6804939
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||    
T  6804891 ggtggggtttagcatgggaaagaggagttgtttcccaccatggaaaagt 6804939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 4789521 - 4789568
Alignment:
Q  110 gtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagt 4789568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 4820454 - 4820500
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||||    
T  4820454 ggtggggtttaacatgggaaagggaaattgttttccaccatgggaaa 4820500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 6804874 - 6804826
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttt 164  Q
    |||||||||||  || ||| |||||||||||||||||||||||||||||    
T  6804874 tttagcatgggtcagtgaagttgtttcccaccatgggaaagtcaatttt 6804826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 35262449 - 35262500
Alignment:
Q  106 aacggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||| ||||||||||||||||   |||||||||| |||||||||||||    
T  35262449 aacggtggagtttagcatgggaaaggataattgtttcctaccatgggaaagt 35262500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 6007702 - 6007654
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||| ||||||||| ||| ||||||||||  ||||||||||    
T  6007702 ggtggggtttagaatgggaaagggaatttgtttcccatgatgggaaagt 6007654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 9142054 - 9142094
Alignment:
Q  116 tttagcatgggaaagagaaattgtttcccaccatgggaaag 156  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  9142054 tttagtatgggaaagggaagttgtttcccaccatgggaaag 9142094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 21771322 - 21771274
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||||  | ||| |||||| |||||||||||    
T  21771322 ggtggggtttagcatgggaaagaccagttgcttcccatcatgggaaagt 21771274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 26711568 - 26711624
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttta 165  Q
    |||||||||||| |||||||||  || |||||||||| ||| ||||||| |||||||    
T  26711568 ggtggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaatttta 26711624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 26981305 - 26981361
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaatttta 165  Q
    |||||||||||| |||||||||  || |||||||||| ||| ||||||| |||||||    
T  26981305 ggtggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaatttta 26981361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 32943517 - 32943565
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||| |||||||||||||||   | ||||||||||||||||||||||    
T  32943517 ggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaagt 32943565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 36912246 - 36912293
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||||||||||||||||||||| |  ||| |||||||||||||||||||    
T  36912246 ggtggggtttagcatgggaaag-gctattttttcccaccatgggaaagt 36912293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 42650757 - 42650805
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagt 157  Q
    |||| ||||||||||||||||| | ||||||||  ||||||||||||||    
T  42650757 ggtgaggtttagcatgggaaaggggaattgtttttcaccatgggaaagt 42650805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 579 - 512
Alignment:
Q  109 ggtggggtttagcatgggaaagagaaattgtttcccaccatgggaaagtcaattttaactactagatc 176  Q
    |||||| || |||||||||||| | | |||||||||||||||| ||||| ||||||||| ||||||||    
T  579 ggtgggattaagcatgggaaaggggagttgtttcccaccatggaaaagtaaattttaaccactagatc 512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 15106 - 15061
Alignment:
Q  110 gtggggtttagcatgggaaagagaaattgtttcccaccatgggaaa 155  Q
    |||| |||||||||||||| ||||| || |||||||||||||||||    
T  15106 gtggagtttagcatgggaatgagaagttctttcccaccatgggaaa 15061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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