View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17721_low_5 (Length: 570)
Name: NF17721_low_5
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 39823792 - 39823461
Alignment:
| Q |
12 |
agcaaaggcaatggtatgaagcagatatttgttggaagattgaaaatgtgatagctcatgaaggtgttcaaagagttgagagagttgaacctataagcaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39823792 |
agcaaaggcaatggtatgaagcagatatttgttggaagattgaaaatgtgatagctcatgaaggtgttcaaagagttgagagagttgaacctataagcaa |
39823693 |
T |
|
| Q |
112 |
atgggaacaaagaatgagaaatgctaattttcaagggattggatttggtgaggaatgtgttggtgaggtgaaagctatgcttgatgaacatgctgctgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39823692 |
atgggaacaaagaatgagaaatgctaattttcaagggattggatttggtgaggaatgtgttggtgaggtgaaagctatgcttgatgaacatgctgctgga |
39823593 |
T |
|
| Q |
212 |
tggggattgaagaaagaagatgagcatattgtgcttacttggaaaggtcataatgttgtttttgcttctgcttggttacctgcttaactagttcaacatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39823592 |
tggggattgaagaaagaagatgagcatattgtgcttacttggaaaggccataatgttgtttttgcttctgcttggttacctgcttaactagttcaacatt |
39823493 |
T |
|
| Q |
312 |
tttgcctctttttgtattctatgaataataaa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39823492 |
tttgcctctttttgtattctatgaataataaa |
39823461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 494 - 570
Target Start/End: Complemental strand, 39823310 - 39823234
Alignment:
| Q |
494 |
ccatgaacaatcatagtgtcacaataaattagatctttgttcttgtacctgcaaaagcaaaggtgggaggaaaaaga |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39823310 |
ccatgaacaatcatagtgtcacaataaattagatctttgttcttgtacctgcaaaagcaaaggtgggaggagaaaga |
39823234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 5617627 - 5617905
Alignment:
| Q |
14 |
caaaggcaatggtatgaagcagatatttgttggaagattgaaaatgtgatagctcatgaaggtgttcaaagagttgagagagttgaacctataagcaaat |
113 |
Q |
| |
|
|||||||| |||| ||||| || |||||||||||| |||| ||||||||||| ||||||| |||||||||| |||||||| || ||| || ||| | |
|
|
| T |
5617627 |
caaaggcagtggtgcgaagctgaaatttgttggaaggttgagaatgtgatagcatatgaagggattcaaagagtcgagagagtcgagtctaaaaccaagt |
5617726 |
T |
|
| Q |
114 |
gggaacaaagaatgagaaatgctaattttcaagggattggatttggtgaggaatgtgttggtgaggtgaaagctatgcttgatgaacatgctgctggatg |
213 |
Q |
| |
|
|||| || ||||||||||||| |||||||||| || | || ||||||| | ||| ||||| || || ||||||||||| ||||| | |||||| |
|
|
| T |
5617727 |
gggagaaacgaatgagaaatgcacgttttcaaggggtttgtttcagtgaggattcggttttggaggttaaggccatgcttgatgagcatgcagttggatg |
5617826 |
T |
|
| Q |
214 |
gggattgaagaaagaagatgagcatattgtgcttacttggaaaggtcataatgttgtttttgcttctgcttggttacct |
292 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
5617827 |
gggattgaagaaagaagacgagtttcttgtgcttacttggaaagggcataatgttatatttgcttctgcttggttacct |
5617905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 21162914 - 21163192
Alignment:
| Q |
14 |
caaaggcaatggtatgaagcagatatttgttggaagattgaaaatgtgatagctcatgaaggtgttcaaagagttgagagagttgaacctataagcaaat |
113 |
Q |
| |
|
|||||||| |||| ||||| || |||||||||||| |||| ||||||||||| ||||||| |||||||||| |||||||| || ||| || ||| | |
|
|
| T |
21162914 |
caaaggcagtggtgcgaagctgaaatttgttggaaggttgagaatgtgatagcatatgaagggattcaaagagtcgagagagtcgagtctaaaaccaagt |
21163013 |
T |
|
| Q |
114 |
gggaacaaagaatgagaaatgctaattttcaagggattggatttggtgaggaatgtgttggtgaggtgaaagctatgcttgatgaacatgctgctggatg |
213 |
Q |
| |
|
|||| || ||||||||||||| |||||||||| || | || ||||||| | ||| ||||| || || ||||||||||| ||||| | |||||| |
|
|
| T |
21163014 |
gggagaaacgaatgagaaatgcacgttttcaaggggtttgtttcagtgaggattcggttttggaggttaaggccatgcttgatgagcatgcagttggatg |
21163113 |
T |
|
| Q |
214 |
gggattgaagaaagaagatgagcatattgtgcttacttggaaaggtcataatgttgtttttgcttctgcttggttacct |
292 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
21163114 |
gggattgaagaaagaagacgagtttcttgtgcttacttggaaagggcataatgttatatttgcttctgcttggttacct |
21163192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University