View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_9 (Length: 518)
Name: NF17721_low_9
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 309 - 503
Target Start/End: Complemental strand, 29999684 - 29999490
Alignment:
| Q |
309 |
taacttatcatcactgctacaaaacaaatcagctaccaccagcagctgtagcagcagcagcagtattagcaacccaattaggaattgcaatagcagaaga |
408 |
Q |
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| T |
29999684 |
taacttatcatcactgctacaaaacaaatcagctaccaccagcagctgtagtagcagcagcagtattagcaacccaattaggaattgaaatagcagaaga |
29999585 |
T |
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| Q |
409 |
aaatggatctgtgaaaccaaattcatctaaactctcaaagaaatcatcacttaaaacaacatcagataaaccaaattcatctccttcttcatcat |
503 |
Q |
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| T |
29999584 |
aaatggatctgggaaaccaaattcatctaaactctcaaagaaatcatcacttaaaacaacatcagataaaccaaattcatctccttcttcatcat |
29999490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 29999925 - 29999751
Alignment:
| Q |
70 |
gactttacattaccaaggtatg-aagtattaataaatgcctaataatcatccaatcaaatttaacaagattagcatagacaagtaaa-tgctaatctatg |
167 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
29999925 |
gactttacattaccaaggtatgtaagtattaataaatgcctaataatcatccaatcaaatttaacaagattaacatagacaagtaaaatgctaatctatg |
29999826 |
T |
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| Q |
168 |
ttcctactagttcctccctactatactacacttccattgttagcaaagattcctctaaaatgttccattttctct |
242 |
Q |
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| T |
29999825 |
ttcctactagttcctccctactatactacacttccattgttagcaaagattcctctaaaatgttccattttctct |
29999751 |
T |
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