View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_high_15 (Length: 232)
Name: NF17722_high_15
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 55912661 - 55912450
Alignment:
| Q |
1 |
gtgagatttacttatttaactgattgagatgagtaacgtactcattttgctttcttgtttaattccttactcttacattcaaaagcaagaggtacatgat |
100 |
Q |
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| T |
55912661 |
gtgagatttacttatttaactgattgagatgagtaacgtactcattttgctttcttgtttaattccttactcctacattcaaaagcaagaggtacatggt |
55912562 |
T |
|
| Q |
101 |
gctcaagttttgtttactactcttgtataacctgttacctcttcctcggttgatttctcgtgtatgcaacatactctagaatttataagtttagtctact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55912561 |
gctcaagttttgtttactactcttgtataacctgttacctcttcctcggttgatttctcgtgtatgcaacatactctagaatttataagtttagtctact |
55912462 |
T |
|
| Q |
201 |
ctcagaattctg |
212 |
Q |
| |
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|||||||||||| |
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| T |
55912461 |
ctcagaattctg |
55912450 |
T |
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