View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17722_high_6 (Length: 368)
Name: NF17722_high_6
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_high_6 |
 | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0064 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 56177 - 56520
Alignment:
| Q |
11 |
acctgtgccaatgattaccaagtttattggattttatgggagcagtggatttcctttcaaagataaaaatgaaaagttggtattttatgaacctgagtat |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56177 |
acctgtgccaatgatttccaagtttattggattttatgggagcagtggatttcttttcaaagataaaaatgaaaagttggtattttatgaacctgagtat |
56276 |
T |
|
| Q |
111 |
gaaaatagaaaggatcttcaggtttgtggaaagcatgattctataagaggtgttagatatatggaaagtcttgttttgcttcaaaggggaacggaaagta |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
56277 |
gaaaatataaaggatcttcaggtttgtggaaagcatgattctataagagctgttagatatatggaaagtcttgttttgcttcaaaggggaaaggaaagta |
56376 |
T |
|
| Q |
211 |
gtcagcactgtttttcttgtaggttagttccagatcatatactgaatcaaaatgagtaattttcctttcttttatttttaattagtgggttgtaaacact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
56377 |
gtcagcactgtttttcttgtaggttagttccagatcatatactgaatcaaaatgagtaattttccattcttttatttttaattagtgggttgtaaacact |
56476 |
T |
|
| Q |
311 |
taaccatggtcttaggtatatgttgttgtatgcaaggtgttttt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56477 |
taaccatggtcttaggtatatgttgttgtatgcaaggtgttttt |
56520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 26813918 - 26814075
Alignment:
| Q |
86 |
gttggtattttatgaacctgagtatgaaaatagaaaggatcttcaggtttgtggaaagcatgattctataagaggtgttagatatatggaaagtcttgtt |
185 |
Q |
| |
|
|||||| || |||||||||||| |||||||||||||| |||||||| || || |||| |||||| || ||| || |||||| ||||||||||||||| |
|
|
| T |
26813918 |
gttggtgttgtatgaacctgagaatgaaaatagaaagtatcttcagtttaatgaaaagggtgattcaatgagaactgctagatacatggaaagtcttgtt |
26814017 |
T |
|
| Q |
186 |
ttgcttcaaaggggaacggaaagtagtcagcactgtttttcttgtaggttagttccag |
243 |
Q |
| |
|
| ||| ||||||||| ||||| |||| || |||||||| ||||| || ||||||| |
|
|
| T |
26814018 |
tcacttaaaaggggaaatgaaagcagtcgccaatgtttttcctgtagtttcgttccag |
26814075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University