View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17722_high_8 (Length: 361)
Name: NF17722_high_8
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 41141539 - 41141887
Alignment:
| Q |
6 |
agaaaaaacgtttcaaatttgagctaataataacgggaaggttgtaaaaggttttgggtaacatt----caaccggttagattggtataatacaaaatta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41141539 |
agaaaaaacgtttcaaatttgagctaataataacgggaaggttgtaaaaggttttgggtaacattcattcaaccggttagattggtataatacaaaatta |
41141638 |
T |
|
| Q |
102 |
aacaagtgtaccaattctaatggttacaacatatgatgtataaatgtattgacacaatttaaagatagatacgccatgaatatttctatataattcactt |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41141639 |
aaaaagtgtaccaattctaatggttacaacatatgatgtataaatgtattgacacaatttaaagatagatacgccatgaatatttctatataattcactt |
41141738 |
T |
|
| Q |
202 |
gtaaaaggaagcaaaagcaaaaaactacagcatgacttgtaaaagataatttggcaaagcttggccaaatattttgaggggaaaattaggtccttcctca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41141739 |
gtaaaaggaagcaaaagcaaaaaactacagcatgacttgtaaaagataatttggcaaagcttggccaaatattttgaggggaaaattaggtccttcctca |
41141838 |
T |
|
| Q |
302 |
gatctcaactttccaaaactaccataaattatttaattttattcatatt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41141839 |
gatctcaactttccaaaactaccataaattatttaatttcattcatatt |
41141887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University