View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_1 (Length: 606)
Name: NF17722_low_1
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 47258925 - 47258691
Alignment:
| Q |
1 |
tcctcaaattgaatgaaagggaagagaagctgagtatttagcagaataaaacaaaatgtatttcactctgaaaatatcttaaacaaaaatgcctttatac |
100 |
Q |
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| T |
47258925 |
tcctcaaattgaatgaaagggaagagaagctgagtatttagcagaataaaacaaaatgtatttcactctgaaaatatcttaaacaaaaatgcctttatac |
47258826 |
T |
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| Q |
101 |
atgatcaattttccaattgtgagtaaagataagccattttattcattaaaataaagtcatttaaagtgattgacaaaaatattccttaaaagtcacatcc |
200 |
Q |
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| T |
47258825 |
atgatcaattttccaattgtgagtaaagataaaccattttattcattaaaataaagtcatttaaagtgattgacaaaaatattccttacaagtcacatcc |
47258726 |
T |
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| Q |
201 |
caatgattagaatttaaatttaaggccatgcatat |
235 |
Q |
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| T |
47258725 |
caatgattagaatttaaatttaaggccatgcatat |
47258691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 301 - 455
Target Start/End: Complemental strand, 47258637 - 47258483
Alignment:
| Q |
301 |
catacttctcttatgttagcttcctttttattcttttaactttgttctgatgttaatgtatcaaacttcattcaatcgtatactcttagttatagccaat |
400 |
Q |
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| T |
47258637 |
catacttctctgatgttagcttcctttttattcttttaactttgttctgatgttaatgtatcaaacttcattcaatcgtatactcttagttatagccaat |
47258538 |
T |
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| Q |
401 |
cgattactgtttacatttctaatgcaaaaataattgttacttgtgacatatgaag |
455 |
Q |
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| T |
47258537 |
cgattactgtttacatttctaatgcaaaaataattgttacttgtgacatatgaag |
47258483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 490 - 606
Target Start/End: Complemental strand, 47258448 - 47258332
Alignment:
| Q |
490 |
tcatatgtcaaccacggtgataattttaacaattgacttattataatgcacttacatgtgtcagtgttctgatgatattggacaccgaactcccttccgg |
589 |
Q |
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|||||||||||| || || ||||||||||||| ||| ||| || |||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
47258448 |
tcatatgtcaacaactgtaataattttaacaaatgaattaatagaatgtaattacatgtgtcagtgttgtgatgatattggacaccgaactctcttccgg |
47258349 |
T |
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| Q |
590 |
ttaatgttaaagagcat |
606 |
Q |
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| T |
47258348 |
ttaatgttaaagagcat |
47258332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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