View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_11 (Length: 360)
Name: NF17722_low_11
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 22299877 - 22300216
Alignment:
| Q |
5 |
gcacagaaaatttaaagtttaatcgtaaggtaagtataaataaattaagtattgttccacgtgagaatcgtactcggaatttttcaaatattttgttatt |
104 |
Q |
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| T |
22299877 |
gcacagaaaatttaaagtttaaccgtaaggtaagtatagataaactaagtattcttccacgtgagaatcctactcggattttttcaaatattttgttatt |
22299976 |
T |
|
| Q |
105 |
tggtgaagtgaccaatcatttgaatctaatcacatgttttaacgaggcttatatcatttggagactgaatactaaata-ttaacnnnnnnnnttgaaaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
22299977 |
tggtgaagtgaccaatcatttgaatctaatcacatgttttaatgaggcttatatcatttggagactgaatactgaatatttaacaaaaaaaattgaaaca |
22300076 |
T |
|
| Q |
204 |
aaagtgacaatctaggaacagaaggtgtataactttttcgtacagaaaatnnnnnnncttttccttaacatacattttgaaaattcacatagcctattca |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22300077 |
aaagtgacaatctaggaacagaaggtgtataactttttcgtccagaaaataaaaaaacttttccttaacatacattttgaaaattcacatagcctattca |
22300176 |
T |
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| Q |
304 |
atgtaatctttgaaaatgatgagaatctttgcctaagtac |
343 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
22300177 |
atgtaatctttgaaaatgctgagaatctttgcctaagtac |
22300216 |
T |
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