View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_13 (Length: 355)
Name: NF17722_low_13
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 27210084 - 27210179
Alignment:
| Q |
163 |
tgactttgaggttgtttttgtctggcgtgataaagatgatgagacctttaagacctacttttccaagatgtcgtggctggctattccattttctga |
258 |
Q |
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| T |
27210084 |
tgactttgaggttgtttatgtctcacgtgataaagatgatgagacctttaacaactacttttccaagatgccatggctggctatcccattttctga |
27210179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 27194684 - 27194780
Alignment:
| Q |
33 |
ataccgatggaatattgaggtgctatttctcatattttgaaactcagagtcacaggtaaaattgataggttgaagggaaagaaacttgatttctattttt |
132 |
Q |
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| T |
27194684 |
ataccgatggaatattgtggtgctatttcttatattttgaaattcacag-----gttaaaattgatagcttgaagggaaagaaacttggtttctattttt |
27194778 |
T |
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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 27194850 - 27194954
Alignment:
| Q |
158 |
aatgctgactttgaggttgtttttgtctggcgtgataaagatgatgagacctttaagacctacttttccaagatgtcgtggctggctattccattttctg |
257 |
Q |
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| T |
27194850 |
aatggtgaatttgaggttgtttttgtctcagccgataaagatgatgaggcttttaagagctacttttccaagatgccatggctagctatcccattttctg |
27194949 |
T |
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| Q |
258 |
attca |
262 |
Q |
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| T |
27194950 |
attca |
27194954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 27209956 - 27210009
Alignment:
| Q |
82 |
tcacaggtaaaa-ttgataggttgaagggaaagaaacttgatttctatttttca |
134 |
Q |
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| T |
27209956 |
tcacaggtaaaaattgatagcttgaagggaaagaaacttggtttttatttttca |
27210009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 27194983 - 27195023
Alignment:
| Q |
259 |
ttcatgtaaacggcattcctcatcttgcattgcttgatgaa |
299 |
Q |
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| T |
27194983 |
ttcatgtcaacggaattcctcatcttgcattgcttgatgaa |
27195023 |
T |
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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 27195319 - 27195358
Alignment:
| Q |
316 |
atacttatatctgagcttgagggaaagacagttggtttgc |
355 |
Q |
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| T |
27195319 |
atacctatctctgagcttgagggaaagacagttggtttgc |
27195358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 27210212 - 27210251
Alignment:
| Q |
259 |
ttcatgtaaacggcattcctcatcttgcattgcttgatga |
298 |
Q |
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| T |
27210212 |
ttcatgtaaaaggcattcctcatcttgcattgctcgatga |
27210251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 28392486 - 28392535
Alignment:
| Q |
20 |
ttgtactcatatcataccgatggaatattgaggtgctatttctcatattt |
69 |
Q |
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| T |
28392486 |
ttgtactcatatcataccgatgaaatattgtggtgctatttctcatattt |
28392535 |
T |
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