View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_15 (Length: 294)
Name: NF17722_low_15
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 38188513 - 38188793
Alignment:
| Q |
1 |
ttaaaattgttataggtagagacaaacaaggttatcaaacttgacagtataggtagagacatggaatcctagacaactcaagttgaaaagaatttattat |
100 |
Q |
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| T |
38188513 |
ttaaaattgttataggtagagacaaacaaggttatcaaacttgatagtataggtagagacatggaatcctagacaactcaagttgaaaagaatttattat |
38188612 |
T |
|
| Q |
101 |
attctgccnnnnnnnatcttggcaatgaacataatttaaaaattaactagctctattacttataaacctaatgagcagtgcaaagtagatgcaactcaat |
200 |
Q |
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| T |
38188613 |
attctgcctttttttatcttggcaatgaacataatttaaaaattaactagctctattacttataaacctaatgagcagtgcaaagtagatgcaactcaat |
38188712 |
T |
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| Q |
201 |
tcaaatatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaactagaa |
281 |
Q |
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| T |
38188713 |
tcaaatatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaactagaa |
38188793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 38921960 - 38921889
Alignment:
| Q |
205 |
atatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaac |
276 |
Q |
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| T |
38921960 |
atatccaacaaagtcagtcaaaaggtcattttaacacaaaaaccatgtattaatccaggcgtgtaaactaac |
38921889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 38922361 - 38922314
Alignment:
| Q |
19 |
gagacaaacaaggttatcaaacttgacagtataggtagagacatggaa |
66 |
Q |
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||||||| |||||||||||||||||||||| | |||||| |||||||| |
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| T |
38922361 |
gagacaagcaaggttatcaaacttgacagttttggtagacacatggaa |
38922314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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