View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17722_low_18 (Length: 269)
Name: NF17722_low_18
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_18 |
 | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0224 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 13767 - 14004
Alignment:
| Q |
17 |
tgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
116 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13767 |
tgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
13866 |
T |
|
| Q |
117 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13867 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
13966 |
T |
|
| Q |
217 |
atacaacctcgtgacccttttaatcatgtctagtcctt |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13967 |
atacaacttcgtgacccttttaatcatgtctagtcctt |
14004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 42933004 - 42932767
Alignment:
| Q |
17 |
tgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
116 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42933004 |
tgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
42932905 |
T |
|
| Q |
117 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42932904 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
42932805 |
T |
|
| Q |
217 |
atacaacctcgtgacccttttaatcatgtctagtcctt |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42932804 |
atacaacttcgtgacccttttaatcatgtctagtcctt |
42932767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University