View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_19 (Length: 258)
Name: NF17722_low_19
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 35021397 - 35021554
Alignment:
| Q |
66 |
caagaatcacgttcccgccaaattgtaaaaactctgtaactaaactaaactaactaaccaattcatcattcatttcat-----------aaacctttctc |
154 |
Q |
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| T |
35021397 |
caagaatcacgttcccgccaaattgtaaaaactctgtaactaaactaaactaactaaccaattcatcattcatttcataaacccttcaaaaacctttctc |
35021496 |
T |
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| Q |
155 |
tctctcatcaccttccaagaatcaccaccatcatgtttcatcacagtaccttcatgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021497 |
tctctcatcaccttccaagaatcaccaccatcatgtttcatcacagtaccttcatgat |
35021554 |
T |
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