View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17722_low_2 (Length: 589)
Name: NF17722_low_2
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 28 - 465
Target Start/End: Original strand, 7463708 - 7464144
Alignment:
| Q |
28 |
gggaagagtccggaaaaggcggtggtggtgttgttaggatggcgatttgcgcggcggtcagtggtggcgctgagaacggtaagggtggtgggtgttccat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7463708 |
gggaagagtccggaaaaggcggtggtggtgttgttaggatggcgatttgtgcggcagtcagtggtggcgctgagaacggtaagggtggtgggtgttccat |
7463807 |
T |
|
| Q |
128 |
aatgatgagatagattataagagaagttacacaactaaagtgtgagtattattatgtgtcatgtggttatgttttaggtttggttgaaaaagtggttggc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7463808 |
aatgatgagatagattataagagaagttacacaactaaagtgtgagtattattatgtgtcatgtggttatgttttaggtttggttgaaaaagtggttggc |
7463907 |
T |
|
| Q |
228 |
tatgtttgttaataacacaaatgaaagggatagttatgttttgatgttacttgtttcagctttattaggaatttttaagttttaataattgatagggggg |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7463908 |
tatgtttgttaataacacaaatgaaagggatagttatgttttgatgttacttgtttcagctttattaggaatttttatgttttaataattgatagggggg |
7464007 |
T |
|
| Q |
328 |
tgggagttagaactaagataatgtggattagatgttaagtaagaatataaaactacaccnnnnnnngcgtgtacggtgtttgagtagttggttgataatt |
427 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||| ||| |
|
|
| T |
7464008 |
tgggagtgagaactaatataatgtggattagatgttaagtaagaatataaaactacacctttttttgcgtgta-tgtgtttgggcagttggttgatgatt |
7464106 |
T |
|
| Q |
428 |
gatgtgtggttaagagtttgatctctgagtagtgcata |
465 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
7464107 |
gatgtgtggttaagagtttgatttctgaggagtgcata |
7464144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 507 - 574
Target Start/End: Original strand, 7464208 - 7464276
Alignment:
| Q |
507 |
tcgtttgatctcaaattaacgagtgagatt-aattaataaatgaattagtggaaaattctacggtaaaa |
574 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
7464208 |
tcgtttgatctcaaattaatgagtgagattaaattaataagtgaatttgtggaaaattcttaggtaaaa |
7464276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University