View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17722_low_3 (Length: 581)

Name: NF17722_low_3
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17722_low_3
NF17722_low_3
[»] chr5 (8 HSPs)
chr5 (243-536)||(41995515-41995806)
chr5 (14-179)||(41995262-41995422)
chr5 (250-309)||(39695953-39696011)
chr5 (533-565)||(41996517-41996549)
chr5 (236-274)||(21542069-21542107)
chr5 (275-309)||(43564964-43564998)
chr5 (236-309)||(21351852-21351925)
chr5 (245-309)||(19429480-19429544)
[»] chr6 (6 HSPs)
chr6 (236-302)||(21395262-21395328)
chr6 (245-309)||(4388133-4388197)
chr6 (262-308)||(9025448-9025494)
chr6 (250-309)||(6389790-6389849)
chr6 (236-272)||(9107354-9107390)
chr6 (236-272)||(16766736-16766772)
[»] chr8 (7 HSPs)
chr8 (236-309)||(13436912-13436984)
chr8 (262-309)||(29447041-29447088)
chr8 (262-309)||(27213595-27213642)
chr8 (262-309)||(39820499-39820545)
chr8 (275-309)||(15816060-15816094)
chr8 (236-274)||(22652015-22652053)
chr8 (245-309)||(9383018-9383083)
[»] chr7 (9 HSPs)
chr7 (236-309)||(11272532-11272606)
chr7 (256-309)||(28155618-28155671)
chr7 (264-309)||(35862023-35862068)
chr7 (263-309)||(21880223-21880269)
chr7 (262-309)||(598278-598325)
chr7 (236-274)||(24339681-24339719)
chr7 (275-309)||(29812600-29812634)
chr7 (256-309)||(6490780-6490833)
chr7 (236-280)||(1885612-1885656)
[»] chr3 (3 HSPs)
chr3 (236-309)||(4990914-4990987)
chr3 (256-308)||(21367330-21367382)
chr3 (262-309)||(41961581-41961628)
[»] chr2 (2 HSPs)
chr2 (236-306)||(23058389-23058462)
chr2 (263-309)||(4747819-4747865)
[»] chr4 (8 HSPs)
chr4 (255-309)||(20633534-20633588)
chr4 (262-309)||(22440559-22440606)
chr4 (262-309)||(24613632-24613679)
chr4 (262-309)||(35530450-35530497)
chr4 (275-309)||(18844425-18844459)
chr4 (256-309)||(17425349-17425402)
chr4 (256-305)||(30094077-30094126)
chr4 (236-309)||(4383406-4383483)
[»] chr1 (10 HSPs)
chr1 (262-311)||(16297221-16297270)
chr1 (256-309)||(35702544-35702599)
chr1 (262-309)||(32461395-32461442)
chr1 (256-309)||(13436506-13436560)
chr1 (275-309)||(18556387-18556421)
chr1 (236-274)||(47989536-47989574)
chr1 (268-309)||(36878542-36878583)
chr1 (269-309)||(9630563-9630603)
chr1 (245-309)||(10572536-10572600)
chr1 (236-272)||(31694694-31694730)
[»] scaffold0003 (1 HSPs)
scaffold0003 (262-309)||(241675-241722)
[»] scaffold0004 (1 HSPs)
scaffold0004 (263-309)||(92893-92939)
[»] scaffold0044 (1 HSPs)
scaffold0044 (243-271)||(53226-53254)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 243 - 536
Target Start/End: Original strand, 41995515 - 41995806
Alignment:
Q  243 aagtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcatcaaatgacaatcagccgaaatgttaaggcacag 342  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41995515 aagtgtcggtgccgtatcggtgtcggacacgaggacacgcctaatcctaggagtgtccgtgcttcatcaaatgacaatcagccgaaatgttaaggcacag 41995614  T
Q  343 acagattctacaactttgactatcagtacccaacatcttgatatatagaaatcagtagtaaacatttgaaactaaaaacttagtggccacactcaatgct 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41995615 acagattctacaactttgactatcagtacccaacatcttgatat--agaaatcagtagtaaacatttgaaactaaaaacttagtggccccactcaatgct 41995712  T
Q  443 tttaaattcaaccccagacaaggaatgaccggatatttcattttgcttagtgtgtgtttggtgtcaatgtgagttttccaaagtcacgtaactc 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41995713 tttaaattcaaccccagacaaggaatgaccggatatttcattttgcttagtgtgtgtttggtgtcaatgtgagttttccaaagtcacgtaactc 41995806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 41995262 - 41995422
Alignment:
Q  14 ttctcaatgtggttgtgtgaaaacagattggagtgaagccaactacaccattatgacttatgagctaacaaaattgttacttttcaattttctagaagaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||    
T  41995262 ttctcaatgtggttgtgtgaaaacagattggagtgaagccaactacaccattat-------gagctaacaaaattgttacttttcaattttccagaagaa 41995354  T
Q  114 atattatgaagcttagcaaactc--agtaatgataggataatagagnnnnnnntcaaagggaatgaag 179  Q
    |||||||||||||||||||||||  |||||||||||||||||||||       |||||||||||||||    
T  41995355 atattatgaagcttagcaaactcaaagtaatgataggataatagagaaaaaaatcaaagggaatgaag 41995422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 39696011 - 39695953
Alignment:
Q  250 ggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| |||||||||||| |||||| |||||||||||||||||| |||||| |||||||||    
T  39696011 ggtgtcgtgtcggtgtccgacacg-ggacacgcctaatcctaggagtgtcggtgcttcat 39695953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 533 - 565
Target Start/End: Original strand, 41996517 - 41996549
Alignment:
Q  533 actccatccatgtacacgtattcatcatcatat 565  Q
    |||||||||||||||||||||||||||||||||    
T  41996517 actccatccatgtacacgtattcatcatcatat 41996549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 21542069 - 21542107
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacga 274  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  21542069 taattacaagtgtcggtgtcgtgtcggtgtcggacacga 21542107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 43564964 - 43564998
Alignment:
Q  275 ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  43564964 ggacacgcctaatccgagaagtgtccgtgcttcat 43564998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 21351925 - 21351852
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| ||||||||||||| | |||||||||| |||||  | ||||| ||||||| |  ||||||||||||||||    
T  21351925 taattacaagtgtcggtgtcatgtcggtgtccgacactggaacacgtctaatccgaagagtgtccgtgcttcat 21351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 19429480 - 19429544
Alignment:
Q  245 gtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||| || |||||||||||| |||||  || |||| ||||||| ||||||||| |||||||||    
T  19429480 gtgtcgctgtcgtgtcggtgtctgacaccgggtcacgtctaatccaagaagtgtctgtgcttcat 19429544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 21395328 - 21395262
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgt 302  Q
    |||| ||||||||||||| |||||| ||||||||||| |||||||||||||||| || |||||||||    
T  21395328 taattacaagtgtcggtgtcgtgtcagtgtcggacaccaggacacgcctaatccaaggagtgtccgt 21395262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 4388133 - 4388197
Alignment:
Q  245 gtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| ||| |||| ||||||| ||||||||||||||||| |||| ||||||||| |||||||||    
T  4388133 gtgtcagtgtcgtggcggtgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcat 4388197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 9025494 - 9025448
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttca 308  Q
    ||||| |||||  ||||||||||||||| ||||||||||||||||||    
T  9025494 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 6389790 - 6389849
Alignment:
Q  250 ggtgccgtgtcggtgt-cggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| ||||||||||| | |||||| |||||| |||||||| |||||||||||||||||||    
T  6389790 ggtgtcgtgtcggtgttccgacacg-ggacactcctaatccgagaagtgtccgtgcttcat 6389849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 9107390 - 9107354
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacac 272  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  9107390 taattacaagtgtcggtgtcgtgtcggtgtcggacac 9107354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 16766736 - 16766772
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacac 272  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  16766736 taattacaagtgtcggtgtcgtgtcggtgtcggacac 16766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 13436984 - 13436912
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||||||||||||||| |||||||||||| |||||  ||||||||||||||| || |||||| |||||||||    
T  13436984 taataacaagtgtcggtgtcgtgtcggtgtc-gacaccgggacacgcctaatccaaggagtgtctgtgcttcat 13436912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 29447088 - 29447041
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  29447088 gtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcat 29447041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 27213595 - 27213642
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||||||||  ||||||| ||||||| |||||||||||||||||||    
T  27213595 gtgtcggacaccgggacacggctaatccgagaagtgtccgtgcttcat 27213642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 39820499 - 39820545
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  39820499 gtgtccgacacg-ggacacgcctaatccgagaagtgtccgtgcttcat 39820545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 15816094 - 15816060
Alignment:
Q  275 ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  15816094 ggacacgcctaatccgagaagtgtccgtgcttcat 15816060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 22652015 - 22652053
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacga 274  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  22652015 taattacaagtgtcggtgtcgtgtcggtgtcggacacga 22652053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 9383018 - 9383083
Alignment:
Q  245 gtgtcggtgccgtgtcggtgtcggacacg-aggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| ||| ||||||||||||  ||||  |||||||||||||||| || ||||||||||||||||    
T  9383018 gtgtctgtgtcgtgtcggtgtcaaacacacaggacacgcctaatccaagcagtgtccgtgcttcat 9383083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 11272606 - 11272532
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacg-aggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| ||||||||||||| |||||||||||||||||||  ||||||||||||||| || ||| || |||||||||    
T  11272606 taattacaagtgtcggtgtcgtgtcggtgtcggacacgcgggacacgcctaatccgaggagtatctgtgcttcat 11272532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 28155618 - 28155671
Alignment:
Q  256 gtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||||| |||||||||||||||| || | ||||||||||||||    
T  28155618 gtgtcggtgtcggacaccaggacacgcctaatccaaggaatgtccgtgcttcat 28155671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 35862023 - 35862068
Alignment:
Q  264 gtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||||||||||||||||||||||| || ||||||||||||||||    
T  35862023 gtcggacacgaggacacgcctaatccgaggagtgtccgtgcttcat 35862068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 21880223 - 21880269
Alignment:
Q  263 tgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| ||||| |||||||||||||||| |||||||||||||||||||    
T  21880223 tgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcat 21880269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 598278 - 598325
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  598278 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 598325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 24339681 - 24339719
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacga 274  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  24339681 taattacaagtgtcggtgtcgtgtcggtgtcggacacga 24339719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 29812634 - 29812600
Alignment:
Q  275 ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  29812634 ggacacgcctaatccgagaagtgtccgtgcttcat 29812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 6490780 - 6490833
Alignment:
Q  256 gtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||| |||||  |||||||| |||||| || ||||||||||||||||    
T  6490780 gtgtcggtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcat 6490833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 1885612 - 1885656
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacgaggacac 280  Q
    |||| ||||||||||||| ||||| |||||||||||| |||||||    
T  1885612 taatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacac 1885656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 4990987 - 4990914
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| ||||||||||| | ||||| ||| || |||||| ||||||||||||||| || ||||||||||||||||    
T  4990987 taattacaagtgtcggcgtcgtgttggtatcagacacgtggacacgcctaatccgaggagtgtccgtgcttcat 4990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 21367330 - 21367382
Alignment:
Q  256 gtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttca 308  Q
    |||||||||||||||||  |||||| |||||||| ||||||||| ||||||||    
T  21367330 gtgtcggtgtcggacacttggacacacctaatccgagaagtgtctgtgcttca 21367382  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 41961628 - 41961581
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  41961628 gtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcat 41961581  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 23058462 - 23058389
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcg---gacacgaggacacgcctaatcctagaagtgtccgtgctt 306  Q
    |||| ||||||||||||| ||||||||||| |   |||||  ||||||||||||||| ||||||||||||||||    
T  23058462 taattacaagtgtcggtgtcgtgtcggtgttgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 23058389  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 4747865 - 4747819
Alignment:
Q  263 tgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||||||| | |||||||||| ||||||| |||||||||||||||    
T  4747865 tgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcat 4747819  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 20633534 - 20633588
Alignment:
Q  255 cgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||||||||||||||| | |||||||||||||| || ||||| ||||||||||    
T  20633534 cgtgtcggtgtcggacaccaagacacgcctaatccaaggagtgttcgtgcttcat 20633588  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 22440606 - 22440559
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  22440606 gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 24613679 - 24613632
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| ||||| |||||||| |||||||||| ||||||||||||||||    
T  24613679 gtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcat 24613632  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 35530450 - 35530497
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||||    
T  35530450 gtgtcggacaccatgacacgcctaatcctaaaggtgtccgtgcttcat 35530497  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 18844459 - 18844425
Alignment:
Q  275 ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  18844459 ggacacgcctaatccgagaagtgtccgtgcttcat 18844425  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 17425402 - 17425349
Alignment:
Q  256 gtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| ||||| ||||| |||||||||||||||| || |||||| |||||||||    
T  17425402 gtgtctgtgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttcat 17425349  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 30094077 - 30094126
Alignment:
Q  256 gtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgct 305  Q
    |||||||||||||||||  ||||||||||||||| |  ||||||||||||    
T  30094077 gtgtcggtgtcggacaccgggacacgcctaatccgaagagtgtccgtgct 30094126  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 4383406 - 4383483
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacga----ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| |||| |||| ||| ||||||||||||  ||||||    ||||||||||||||| || ||||||||||||||||    
T  4383406 taattacaaatgtcagtgtcgtgtcggtgtcaaacacgacaccggacacgcctaatccgaggagtgtccgtgcttcat 4383483  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 16297270 - 16297221
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcatca 311  Q
    ||||| ||||| |||||||||||||||| || ||||||||||||||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcatca 16297221  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 35702599 - 35702544
Alignment:
Q  256 gtgtcggtgtcggacacga--ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| |||||||||||||  ||||||||||||||| || ||||||||||||||||    
T  35702599 gtgtcagtgtcggacacgatgggacacgcctaatccgaggagtgtccgtgcttcat 35702544  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 32461442 - 32461395
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  32461442 gtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcat 32461395  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 13436506 - 13436560
Alignment:
Q  256 gtgtcggtgtcggacacg-aggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||| ||||||||||||| || ||||| ||||||| |||||||||||||||||||    
T  13436506 gtgttggtgtcggacacgtagaacacgactaatccgagaagtgtccgtgcttcat 13436560  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 18556421 - 18556387
Alignment:
Q  275 ggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  18556421 ggacacgcctaatccgagaagtgtccgtgcttcat 18556387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 47989536 - 47989574
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacacga 274  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  47989536 taattacaagtgtcggtgtcgtgtcggtgtcggacacga 47989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 36878542 - 36878583
Alignment:
Q  268 gacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||| ||||||||||||||| || ||||||||||||||||    
T  36878542 gacacggggacacgcctaatcccaggagtgtccgtgcttcat 36878583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 9630603 - 9630563
Alignment:
Q  269 acacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  9630603 acacgaggacacgcctaatccgaggagtgttcgtgcttcat 9630563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 10572600 - 10572536
Alignment:
Q  245 gtgtcggtgccgtgtcggtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    |||||||||  |||| |||||| | |||| ||||||||||||| | || ||||||||||||||||    
T  10572600 gtgtcggtgttgtgttggtgtcaggcacgtggacacgcctaattcaaggagtgtccgtgcttcat 10572536  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 31694730 - 31694694
Alignment:
Q  236 taataacaagtgtcggtgccgtgtcggtgtcggacac 272  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  31694730 taattacaagtgtcggtgtcgtgtcggtgtcggacac 31694694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 241675 - 241722
Alignment:
Q  262 gtgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 241722  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 92893 - 92939
Alignment:
Q  263 tgtcggacacgaggacacgcctaatcctagaagtgtccgtgcttcat 309  Q
    ||||||||||  ||||||||||||||| || ||||||||||||||||    
T  92893 tgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcat 92939  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 53226 - 53254
Alignment:
Q  243 aagtgtcggtgccgtgtcggtgtcggaca 271  Q
    |||||||||||||||||||||||||||||    
T  53226 aagtgtcggtgccgtgtcggtgtcggaca 53254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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