View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_4 (Length: 514)
Name: NF17722_low_4
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 55912655 - 55913151
Alignment:
| Q |
1 |
atctcacattttccttcatttcagaattgacatttacaaaaagttgagattctgcagactacataataacctgctaaaaggaacatgttggaaatagagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55912655 |
atctcacattttccttcatttcagaattgacatttacaaaaagttgagattctgcagactacataataacctgctaaaaggaacatgttggaaatagagc |
55912754 |
T |
|
| Q |
101 |
taaatctcaaagtttatatatggaaaaactttggataccatacattatgctaatactaaggtactagtaaaacaggtaacgaaaaataaaggtcagttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55912755 |
taaatctcaaagtttatatatggaaaaactttggataccatacattatgctaatactaaggtactagtaaaacaggtaacgaaaaataaaggtcagttac |
55912854 |
T |
|
| Q |
201 |
acctaacacatccaagcagaagaagtggccatagctcttttcatccaaccaagatagagagcaccatctctatgttcaagccaataattttgatggaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55912855 |
acctaacacatccaagcagaagaagtggccatagctcttttcatccaaccaagatagagagcaccatctctatgttcaagccaataattttgatggaagt |
55912954 |
T |
|
| Q |
301 |
ccttcaacatattttggacagaatgcatcactgaagaactcaattggcattgtctaaatcctgccatggaaaatctcgacctccacttcccaaaaacttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55912955 |
ccttcaacatattttggacagaatgcatcactgaagaactcaattggcattgtctaaatcctgccatggaaaatctcgacctccacttcccaaaaacttc |
55913054 |
T |
|
| Q |
401 |
atgcctctccaccctctcaatcccctcacaggctatcatgttgacaatgtcccgtgccacacagttctgctccacactaatccgcttcttatcgtct |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55913055 |
atgcctctccaccctctcaatcccctcacaggctatcatgttgacaatgtcccgtgccacacagttctgctccacactaatccgcttcttatcgtct |
55913151 |
T |
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