View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17722_low_5 (Length: 504)
Name: NF17722_low_5
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Complemental strand, 45199076 - 45198601
Alignment:
| Q |
12 |
atgaattagatatattctaagcattactcttacaagctctttttggtgaaagatattggtatttagagattttcacatagactccacacaagctatcaaa |
111 |
Q |
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| T |
45199076 |
atgaattagatatattctaagcattactcttacaagctctttttggtgaaagatattggtatttagagattttcacatagactccacacaagctatcaaa |
45198977 |
T |
|
| Q |
112 |
gggcatgcaacaattaaaagtacaacttacgatttgtgaccaaaggactaaagatgttccactatattatctgtcattactaatcataaactcaactatg |
211 |
Q |
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| T |
45198976 |
gggcatgcaacaattaaaagtacaacttacgatttgtgaccaaaggactaaagatgttccactatattatctgtcattactcatcataaactcaactatg |
45198877 |
T |
|
| Q |
212 |
ccattactaa---attccaaatatttttctttacctttaatnnnnnnnntcaaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgatt |
308 |
Q |
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| T |
45198876 |
ccattactaaattattccaaatatttttctttacctttaataaaaaaaatcaaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgatt |
45198777 |
T |
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| Q |
309 |
caaggcagccacaatcatttaatacaataaacatccacatcatttattcaacgatgcataagattatccttcatgagaagatattttgcatgaacttcca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198776 |
caaggcagccacaatcatttaatacaataaacatccacatcatttattcaacgatgcataagattatccttcatgagaagatattttgcatgaacttcca |
45198677 |
T |
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| Q |
409 |
cacaaagagatatcttcaacgaataattttactccatgatgcaaggtcgcaaaagggagacctcttgatgctaaaatat |
487 |
Q |
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| T |
45198676 |
cacaaagagatatcttcaacgaataattttactcc---atgcaaggtcgcaaaagggagacctcttgatgctaaaatat |
45198601 |
T |
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