View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17722_low_6 (Length: 421)

Name: NF17722_low_6
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17722_low_6
NF17722_low_6
[»] chr2 (34 HSPs)
chr2 (26-407)||(27148915-27149296)
chr2 (113-245)||(27149432-27149569)
chr2 (318-407)||(2869605-2869695)
chr2 (318-407)||(28770687-28770776)
chr2 (113-261)||(10445582-10445732)
chr2 (113-261)||(35397325-35397470)
chr2 (113-261)||(8039870-8040019)
chr2 (113-262)||(33528759-33528908)
chr2 (113-222)||(2869832-2869943)
chr2 (113-245)||(23078609-23078742)
chr2 (113-262)||(20522030-20522179)
chr2 (113-261)||(34682472-34682621)
chr2 (202-261)||(21629762-21629822)
chr2 (113-229)||(31055887-31056001)
chr2 (113-229)||(10707389-10707505)
chr2 (318-398)||(15903803-15903883)
chr2 (121-245)||(34388686-34388810)
chr2 (318-407)||(14698922-14699010)
chr2 (318-405)||(35397608-35397694)
chr2 (318-407)||(18674313-18674403)
chr2 (203-254)||(40014746-40014799)
chr2 (184-261)||(16940416-16940496)
chr2 (184-261)||(17011081-17011161)
chr2 (113-230)||(28259315-28259430)
chr2 (318-405)||(31056141-31056227)
chr2 (163-245)||(36757947-36758031)
chr2 (163-245)||(42039855-42039939)
chr2 (113-261)||(17865014-17865162)
chr2 (262-312)||(27147014-27147064)
chr2 (318-407)||(33118231-33118319)
chr2 (119-252)||(15904031-15904174)
chr2 (113-223)||(14699132-14699244)
chr2 (163-224)||(16388297-16388358)
chr2 (113-229)||(33117981-33118095)
[»] chr7 (24 HSPs)
chr7 (113-261)||(3047063-3047215)
chr7 (113-262)||(28617363-28617513)
chr7 (113-262)||(9235693-9235844)
chr7 (113-254)||(4796805-4796949)
chr7 (113-261)||(20283900-20284048)
chr7 (113-261)||(23403151-23403299)
chr7 (113-262)||(46516448-46516598)
chr7 (318-407)||(3047350-3047438)
chr7 (163-261)||(2580199-2580299)
chr7 (163-261)||(5817461-5817559)
chr7 (113-262)||(29159612-29159762)
chr7 (119-265)||(9190152-9190298)
chr7 (113-261)||(49091472-49091621)
chr7 (318-407)||(2647610-2647698)
chr7 (318-392)||(5817183-5817257)
chr7 (119-261)||(9185307-9185449)
chr7 (318-393)||(45685658-45685733)
chr7 (318-368)||(2580524-2580574)
chr7 (318-407)||(20284183-20284273)
chr7 (318-407)||(23402926-23403016)
chr7 (163-245)||(21988733-21988817)
chr7 (212-261)||(2647962-2648013)
chr7 (355-407)||(28617175-28617227)
chr7 (202-259)||(33332675-33332734)
[»] chr8 (18 HSPs)
chr8 (112-261)||(5990698-5990843)
chr8 (124-261)||(7493210-7493352)
chr8 (113-261)||(9765958-9766106)
chr8 (318-407)||(9054750-9054839)
chr8 (318-407)||(5990474-5990563)
chr8 (319-407)||(3051215-3051303)
chr8 (113-261)||(6127029-6127179)
chr8 (119-249)||(5702627-5702757)
chr8 (208-261)||(6813489-6813543)
chr8 (318-352)||(31513245-31513279)
chr8 (318-407)||(7493086-7493175)
chr8 (209-261)||(28307368-28307421)
chr8 (202-261)||(23799803-23799863)
chr8 (113-259)||(26403368-26403515)
chr8 (318-397)||(28307667-28307746)
chr8 (318-368)||(19752306-19752356)
chr8 (209-268)||(26287706-26287767)
chr8 (209-268)||(26312957-26313018)
[»] chr5 (24 HSPs)
chr5 (110-261)||(42127545-42127695)
chr5 (319-407)||(33030854-33030942)
chr5 (113-262)||(19588556-19588705)
chr5 (318-394)||(7160817-7160892)
chr5 (113-261)||(28832071-28832218)
chr5 (113-261)||(11181970-11182120)
chr5 (119-245)||(14520056-14520182)
chr5 (318-407)||(11181745-11181834)
chr5 (113-262)||(3880112-3880259)
chr5 (318-407)||(6741947-6742036)
chr5 (204-261)||(10281673-10281732)
chr5 (318-405)||(2630328-2630415)
chr5 (113-259)||(17004098-17004244)
chr5 (118-245)||(34842434-34842558)
chr5 (202-261)||(42126632-42126693)
chr5 (149-272)||(6741654-6741779)
chr5 (163-261)||(28537430-28537530)
chr5 (208-261)||(33031178-33031231)
chr5 (209-261)||(36932582-36932635)
chr5 (318-407)||(19588841-19588929)
chr5 (318-407)||(10281846-10281936)
chr5 (318-368)||(28832391-28832441)
chr5 (318-368)||(42127323-42127373)
chr5 (163-261)||(15464343-15464444)
[»] chr4 (26 HSPs)
chr4 (113-261)||(25862160-25862308)
chr4 (120-261)||(5112052-5112194)
chr4 (110-254)||(1983433-1983577)
chr4 (113-263)||(54866991-54867143)
chr4 (318-407)||(34670578-34670667)
chr4 (113-268)||(5269329-5269488)
chr4 (113-261)||(10047190-10047338)
chr4 (318-407)||(5112332-5112421)
chr4 (113-245)||(16624147-16624279)
chr4 (110-245)||(5147504-5147639)
chr4 (113-178)||(38152576-38152641)
chr4 (110-260)||(39245805-39245956)
chr4 (113-245)||(16630818-16630950)
chr4 (163-262)||(34496009-34496109)
chr4 (113-193)||(37781743-37781822)
chr4 (318-407)||(37781957-37782047)
chr4 (318-407)||(1983214-1983302)
chr4 (110-229)||(5143104-5143221)
chr4 (317-407)||(25861946-25862035)
chr4 (163-230)||(5396860-5396927)
chr4 (209-261)||(24333621-24333675)
chr4 (318-368)||(36175242-36175290)
chr4 (318-407)||(42599487-42599575)
chr4 (318-407)||(18377454-18377543)
chr4 (318-407)||(39774218-39774307)
chr4 (318-407)||(54867278-54867364)
[»] chr1 (22 HSPs)
chr1 (316-392)||(22819539-22819615)
chr1 (318-407)||(35109450-35109539)
chr1 (113-261)||(775483-775631)
chr1 (318-405)||(32736909-32736996)
chr1 (163-261)||(17345704-17345805)
chr1 (318-407)||(17345432-17345521)
chr1 (113-262)||(29651619-29651770)
chr1 (113-261)||(40816870-40817020)
chr1 (184-261)||(13604830-13604909)
chr1 (123-230)||(32889282-32889387)
chr1 (114-261)||(9023971-9024116)
chr1 (317-364)||(11031386-11031433)
chr1 (110-254)||(19072744-19072889)
chr1 (110-254)||(19120634-19120779)
chr1 (163-261)||(50521288-50521389)
chr1 (318-358)||(9022817-9022857)
chr1 (355-405)||(9023789-9023839)
chr1 (317-407)||(10997051-10997141)
chr1 (119-245)||(21536714-21536839)
chr1 (318-368)||(32889574-32889624)
chr1 (163-244)||(26645083-26645166)
chr1 (318-407)||(40816729-40816816)
[»] chr6 (19 HSPs)
chr6 (113-262)||(31979323-31979472)
chr6 (119-261)||(5572740-5572882)
chr6 (113-262)||(10077303-10077452)
chr6 (163-263)||(27165513-27165614)
chr6 (113-246)||(22963526-22963659)
chr6 (113-246)||(23824734-23824867)
chr6 (163-230)||(21355882-21355949)
chr6 (318-407)||(31979608-31979697)
chr6 (318-407)||(99251-99339)
chr6 (318-407)||(1115017-1115106)
chr6 (113-229)||(5017606-5017724)
chr6 (318-407)||(5572155-5572243)
chr6 (202-261)||(31086687-31086749)
chr6 (318-392)||(14521783-14521857)
chr6 (167-261)||(31077146-31077240)
chr6 (318-368)||(31936711-31936761)
chr6 (318-407)||(21801257-21801346)
chr6 (213-254)||(21801584-21801627)
chr6 (119-245)||(31936414-31936540)
[»] chr3 (30 HSPs)
chr3 (110-261)||(48438025-48438176)
chr3 (202-261)||(18554502-18554563)
chr3 (113-261)||(27038100-27038249)
chr3 (158-242)||(4387102-4387186)
chr3 (113-261)||(40592911-40593063)
chr3 (203-261)||(4387249-4387307)
chr3 (339-407)||(4386851-4386919)
chr3 (113-245)||(30709919-30710051)
chr3 (318-407)||(18552787-18552875)
chr3 (318-407)||(25795876-25795964)
chr3 (113-261)||(27986574-27986720)
chr3 (318-407)||(40844746-40844834)
chr3 (202-261)||(3323778-3323839)
chr3 (202-261)||(6794927-6794988)
chr3 (325-407)||(25517077-25517159)
chr3 (119-245)||(36028932-36029058)
chr3 (163-249)||(1417665-1417753)
chr3 (113-245)||(27026772-27026904)
chr3 (208-261)||(37466102-37466157)
chr3 (318-385)||(1417393-1417460)
chr3 (163-250)||(1417088-1417177)
chr3 (208-263)||(2074881-2074938)
chr3 (318-407)||(3328259-3328349)
chr3 (318-407)||(8126725-8126814)
chr3 (113-226)||(8370615-8370726)
chr3 (109-230)||(35925326-35925445)
chr3 (110-178)||(3328481-3328547)
chr3 (318-351)||(25929299-25929332)
chr3 (318-385)||(24695068-24695133)
chr3 (163-261)||(33386842-33386942)
[»] scaffold0184 (1 HSPs)
scaffold0184 (113-262)||(29620-29778)
[»] scaffold0078 (3 HSPs)
scaffold0078 (113-262)||(43066-43224)
scaffold0078 (118-245)||(23357-23483)
scaffold0078 (318-407)||(23627-23715)
[»] scaffold0006 (1 HSPs)
scaffold0006 (184-261)||(133487-133566)
[»] scaffold0148 (1 HSPs)
scaffold0148 (113-253)||(10546-10688)
[»] scaffold0016 (1 HSPs)
scaffold0016 (318-407)||(102407-102496)
[»] scaffold0087 (2 HSPs)
scaffold0087 (119-230)||(44105-44212)
scaffold0087 (163-230)||(37018-37085)
[»] scaffold1805 (1 HSPs)
scaffold1805 (163-230)||(1252-1319)
[»] scaffold0036 (1 HSPs)
scaffold0036 (119-245)||(85512-85637)
[»] scaffold0176 (1 HSPs)
scaffold0176 (202-261)||(17077-17138)
[»] scaffold0098 (1 HSPs)
scaffold0098 (163-243)||(45085-45166)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 26 - 407
Target Start/End: Original strand, 27148915 - 27149296
Alignment:
Q  26 ttttagaaaatccattagttgttggaaatagtggaggcattgagcaatcctgtcatatttctttgtactactacactctcaaggtgttttgaatatgctt 125  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  27148915 ttttagaaaatccattagttgccggaaatagtggaggcattgagcaatcctgtcgtatttctttgtactactacactcttatggtgttttgaatatgctt 27149014  T
Q  126 gtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctt 225  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  27149015 gtggtgttgctttacaaatagatttagatctatgttattgttgttgttgcttgatgctactttactcattgattatcactttctttgctccacacatctt 27149114  T
Q  226 tgtttgattggtgtgattttgtccgaattaacaacagatatatatgaaagacttcatatggtgttgtgatagaaggtggcaaaattagtcttttttctct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149115 tgtttgattggtgtgattttgtccgaattaacaacagatatatatgaaagacttcatatggtgttgtgatagaaggtggcaaaattagtcttttttctct 27149214  T
Q  326 taggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  27149215 taggattcattgtgagtgtgggtgacttaaaaaacaggtagaagttaagtcttgttctttgtgagcttttaaggtaatttct 27149296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 27149432 - 27149569
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactga-----atatcacttt 207  Q
    |||||||||| || |||| |||||||||| ||||||||||| ||||||| ||||| ||||| ||||| ||||||||||||| |||     || | | ||     
T  27149432 tttgaatatgtttatggtattgctttacacatagatttagaactattttgttgttattgttacttgaggctactttactcattgattaccatttaaattc 27149531  T
Q  208 ctttgctccacacatctttgtttgattggtgtgatttt 245  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  27149532 ctttgctacacacatctttgtttcattggtgtgatttt 27149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 2869605 - 2869695
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaag-tcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||||| ||| | | || ||||||||||||||||||| ||||||||    
T  2869605 ttttctcttaggattcattgagagtgtgggtgacttgaaaaatgggtagaaattaggtttttgttctttgtgagcttttaagctaatttct 2869695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 28770687 - 28770776
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagtta-agtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||| ||| || ||||||||||||||||||| ||||||||    
T  28770687 ttttctcttaggattcattgcgagtgtgtatgacttgaaaaatgggtagaaattagagt-ttgttctttgtgagcttttaagctaatttct 28770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 10445582 - 10445732
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 211  Q
    ||||| |||||||||||| ||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||  || ||| || ||||| | |||    
T  10445582 tttgattatgcttgtggttttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagacactttatccattgattaccacttcctttt 10445680  T
Q  212 gctccacacatctttg--tttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||| ||||||    
T  10445681 gctccacacatctttgtttttcattggtgtgattttgtccgaattcacaaca 10445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 35397470 - 35397325
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||| ||||| | || |||||||||| | ||||||   ||||||||||||||| |  | || ||||| ||| ||  |||| || ||    
T  35397470 tttgattatgcttgtggttttgctctgcacatagatttaggtatatttt---gttgttgttgcttgaggtcatttcactcattgattactacttcctctg 35397374  T
Q  213 ctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||| ||||||||||||| ||||||||| ||||||||||||| ||||||    
T  35397373 ctccgcacatctttgtttcattggtgtgtttttgtccgaattcacaaca 35397325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 8040019 - 8039870
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 211  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||| |  ||||||   | ||| || ||||| | |||    
T  8040019 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttgaagacactttatctattgattaccacttcctttt 8039922  T
Q  212 gctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||  || |||||||||||||||| |||||| ||||||    
T  8039921 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 8039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 33528759 - 33528908
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||  || ||| || ||||| |||||    
T  33528759 tttgattatgcttgtggtgttgctctacatttagatctaggtctgtttt--tgttgttgttgcttggggacactttatccattgattaccacttcctttg 33528856  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaacag 262  Q
    ||||||||||||||||  || |||||||  |||||||||||||| |||||||    
T  33528857 ctccacacatctttgttattcattggtggaattttgtccgaattcacaacag 33528908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 2869832 - 2869943
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatt--ttattgttgttgttgcttgatgctactttactcactgaatatcactttctt 210  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||  || |||||||||||| |||||||||||||||||| |||  |  |||| |||    
T  2869832 tttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttgttgttgttgtttgatgctactttactcattgatcactacttcctt 2869931  T
Q  211 tgctccacacat 222  Q
    ||||||| ||||    
T  2869932 tgctccaaacat 2869943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 23078609 - 23078742
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| | | |||| ||||||||||||||||  |  ||||||| || ||| || ||||| |||||    
T  23078609 tttgattatgcttgtggtgttgctctacacttagatctaggtatgtttt-ttgttgttgttgcttggagacactttacacattgattaccacttcctttg 23078707  T
Q  213 ctccacacatctttg--tttgattggtgtgatttt 245  Q
    |||||||||||||||  ||| ||||||||||||||    
T  23078708 ctccacacatctttgtttttcattggtgtgatttt 23078742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 20522179 - 20522030
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| ||||  ||||||| |||||||  |  ||||||  || ||| || ||||| ||||     
T  20522179 tttgattatgcttgtggtgttgctctacacttagatctatgtctttttt--tgttgtttttgcttggagacactttatccattgattaccacttcctttt 20522082  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 262  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  20522081 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 20522030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 34682472 - 34682621
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 211  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  ||||||   | ||| || ||||||| |||    
T  34682472 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccactttctttt 34682569  T
Q  212 gctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||  || ||||||||| |||||| |||||| ||||||    
T  34682570 gctccacacatctttgttattcattggtgtggttttgtacgaattcacaaca 34682621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 21629822 - 21629762
Alignment:
Q  202 cactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  21629822 cacttcctttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 21629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 31056001 - 31055887
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  31056001 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccacttcctttg 31055904  T
Q  213 ctccacacatctttgtt 229  Q
    |||||||||||||||||    
T  31055903 ctccacacatctttgtt 31055887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 10707389 - 10707505
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| ||||||||  |||||||| ||||  ||||| ||| | |||||| ||||||||||||||||  |  ||||||| || ||| || |||||  ||||    
T  10707389 tttgattatgcttgcagtgttgctctacacttagatctaggtatattttcttgttgttgttgcttggagacactttacacattgattaccacttcttttg 10707488  T
Q  213 ctccacacatctttgtt 229  Q
    |||||||||||||||||    
T  10707489 ctccacacatctttgtt 10707505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 15903803 - 15903883
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaag 398  Q
    ||||||| |||||||||||| |||||||| |||||| |||||||||||||| |||    || |||||||||||||| ||||    
T  15903803 ttttctcataggattcattgagagtgtgggtgacttgaaaaatgggtagaaattagaatttgttctttgtgagcttgtaag 15903883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 34388810 - 34388686
Alignment:
Q  121 tgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacac 220  Q
    |||||||||||||||| ||||  ||||| ||| ||| ||||  |||||||||||||||| |  |||||||  | ||| || ||||| |||||||||||||    
T  34388810 tgcttgtggtgttgctctacacttagatctaggtctgtttt--tgttgttgttgcttgaagacactttacatattgattaccacttcctttgctccacac 34388713  T
Q  221 atctttgt--ttgattggtgtgatttt 245  Q
    ||||| ||  || ||||||||||||||    
T  34388712 atcttcgttatttattggtgtgatttt 34388686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 14698922 - 14699010
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  14698922 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttct 14699010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 35397694 - 35397608
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaattt 405  Q
    |||||||||||||||||||| || ||||| |||||| |||||||| ||||| ||| || || |||||| ||| |||||||| ||||||    
T  35397694 ttttctcttaggattcattgagattgtgggtgacttgaaaaatggatagaaattaggt-ttgttctttatgaccttttaagctaattt 35397608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 18674313 - 18674403
Alignment:
Q  318 ttttctcttaggattcattg-tgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||| ||||||||  ||||||||| |||||| |||||||| ||||| ||| |  || ||||||||||||||||||  ||||||||    
T  18674313 ttttctcttatgattcatttatgagtgtgggtgacttgaaaaatggatagaaattatggtttgttctttgtgagcttttaaactaatttct 18674403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 40014799 - 40014746
Alignment:
Q  203 actttctttgctccacacatctttgtttg--attggtgtgattttgtccgaatt 254  Q
    |||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  40014799 acttcctttgctccatacatctttgtttgtcattggtgtgattttgtccgaatt 40014746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 16940416 - 16940496
Alignment:
Q  184 actttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 261  Q
    |||||| ||| ||| || ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  16940416 actttattcattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 17011081 - 17011161
Alignment:
Q  184 actttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 261  Q
    |||||| ||| ||| || ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  17011081 actttattcattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 28259315 - 28259430
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    |||| ||||||||||||||||||| ||||  |||| | || ||| |||| ||||| ||||||||||  |  ||||||| || ||| ||| |||| |||||    
T  28259315 tttgtatatgcttgtggtgttgctctacac-tagact-aggtctgtttttttgttattgttgcttggagacactttacacattgattattacttcctttg 28259412  T
Q  213 ctccacacatctttgttt 230  Q
    ||||||||||||||||||    
T  28259413 ctccacacatctttgttt 28259430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 31056227 - 31056141
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaattt 405  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||| ||||| ||||| |||| ||||||    
T  31056227 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaattt 31056141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 36757947 - 36758031
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||  || ||||||||||||||    
T  36757947 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttattcattggtgtgatttt 36758031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 42039855 - 42039939
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||  || ||||||||||||||    
T  42039855 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttattcattggtgtgatttt 42039939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 17865162 - 17865014
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| | | ||||  ||||||||||| |||  |  | ||||  || ||| || ||||| ||||     
T  17865162 tttgattatgcttgtggtgttgctctacacttagatctaggtatgtttt--tgttgttgttggttggagacattttatccattgattaccacttcctttt 17865065  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||| ||||||  | ||||||||||||||||||||||| ||||||    
T  17865064 ctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 17865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 27147014 - 27147064
Alignment:
Q  262 gatatatatgaaagacttcatat-ggtgttgtgatagaaggtggcaaaatta 312  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  27147014 gatatatatgaa-gacttcatattggtgttgtaatagaaggtggcaaaatta 27147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 33118319 - 33118231
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||| ||||||||| ||||| || ||||  | ||||||||||||| ||||||||| ||||| ||| ||||| |||| ||||||||    
T  33118319 ttttctcttaagattcattgagagtgagggtgac--acaaaatgggtagaaattaagtcttgttcttgtgtaagcttataagctaatttct 33118231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 15904031 - 15904174
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctatt---ttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg--- 212  Q
    ||||||||||||| || |||||| |||| |||||| || ||   || ||||||||||||||||| | |||||| |||| ||| || ||||  |||||       
T  15904031 tatgcttgtggtgatgttttacacatagttttagaactgtttcgttgttgttgttgttgcttgaggatactttgctcattgattaccactccctttgctc 15904130  T
Q  213 ---ctccacacatcttt-gtttgattggtgtgattttgtccgaa 252  Q
       ||||||||||||||  ||| |||||||||||||||||||||    
T  15904131 cacctccacacatctttattttcattggtgtgattttgtccgaa 15904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 14699132 - 14699244
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatct--attttattgttgttgttgcttgatgctactttactcactgaatatcactttctt 210  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||   |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||    
T  14699132 tttgattatgcttgtggtgttgctctacacttagatttaggtctgctttttgttgttgttgttgcttggagacactttatctattgattaccacttcctt 14699231  T
Q  211 tgctccacacatc 223  Q
    |||||||||||||    
T  14699232 tgctccacacatc 14699244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 16388358 - 16388297
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatct 224  Q
    ||||||||| |||||||  |||||||| ||| ||| ||  ||||||||||||||||||||||    
T  16388358 ttgttgttgctgcttgagactactttattcattgattactactttctttgctccacacatct 16388297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 33118095 - 33117981
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||| || |||| |  ||||||   | ||| || ||||| |||||    
T  33118095 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgatgtttgaagacactttatctattgattaccacttcctttg 33117998  T
Q  213 ctccacacatctttgtt 229  Q
     ||||||||||||||||    
T  33117997 atccacacatctttgtt 33117981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 3047215 - 3047063
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatttt---attgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    ||||| ||||||||||||||||||||||| | || |||||| |||||||   |||||||||||||||||| |  |||||||||| ||| |||||||||||    
T  3047215 tttgattatgcttgtggtgttgctttacacacagttttagaactattttgttattgttgttgttgcttgaggacactttactcattgattatcactttct 3047116  T
Q  210 ttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  3047115 ttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 3047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 28617363 - 28617513
Alignment:
Q  113 tttgaatatgcttgtggtgttgcttt-acaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt 211  Q
    |||||||||||||||||||||||||| ||    ||| |||| |||||||| ||||| ||||| ||||| ||||||||||||| ||| || ||||| ||||    
T  28617363 tttgaatatgcttgtggtgttgcttttactctaagacttaggtctattttgttgttcttgtttcttgaggctactttactcattgattaccacttccttt 28617462  T
Q  212 gctccacacatctttgtttgattggtgtgattttgtccgaattaacaacag 262  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  28617463 gctccacacatctttgtttgattaatgtgattttgtccgaattcacaacag 28617513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 9235693 - 9235844
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||  || ||| || ||||| |||||    
T  9235693 tttgattatgcttgtggtgttgctctacatttagatttaggtctgtttttttgttgttgttgcttggagacactttatccattgattaccacttcctttg 9235792  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaacag 262  Q
    ||||||||||||||||  || ||||||||||||||||||||||| |||||||    
T  9235793 ctccacacatctttgttatttattggtgtgattttgtccgaattcacaacag 9235844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 4796805 - 4796949
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttatt-gttgttgttgcttgatgctactttactcactgaatatcactttcttt 211  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| || ||||||||||||||  |  ||||||   | ||| || ||||| ||||    
T  4796805 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttttttttgttgttgttgcttggagaaactttatctattgattaccacttccttt 4796904  T
Q  212 gctccacacatctttgt--ttgattggtgtgattttgtccgaatt 254  Q
    |||||||||||||||||  || |||||||||||||||||||||||    
T  4796905 gctccacacatctttgttattcattggtgtgattttgtccgaatt 4796949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 20284048 - 20283900
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||| ||||  |  ||||||  || ||| ||||||||  ||||    
T  20284048 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgtttcttggagacactttatccattgattatcacttcttttg 20283951  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||  || || |||||||||||||||||||| ||||||    
T  20283950 ctccacacatctttgttattcataggtgtgattttgtccgaattcacaaca 20283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 23403151 - 23403299
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  || |||||| ||| ||||  |||||||||||||||     ||||||  || ||| |||||||| |||||    
T  23403151 tttgattatgcttgtggtgttgctctacacttacatttaggtctgtttt--tgttgttgttgcttggaaacactttatccattgattatcacttcctttg 23403248  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||  || |||||| |||||||||||||||| ||||||    
T  23403249 ctccacacatctttgttattcattggtatgattttgtccgaattcacaaca 23403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 46516448 - 46516598
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| ||||||| |||||||||||||||  ||||||||  ||| |||| |||||||||||| |||  |  ||||||   | ||| || ||||| |||||    
T  46516448 tttgattatgcttttggtgttgctttacacttagatttaagtctgtttt-ttgttgttgttgtttggagacactttatctattgattaccacttcctttg 46516546  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 262  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  46516547 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 46516598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 3047438 - 3047350
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||| ||||| ||||||||| |||||||| ||||||||||| ||||||||| ||| ||||| ||||||||||||||||||| | ||||||    
T  3047438 ttttatcttaagattcattgagagtgtgggtgacttaaaaa-tgggtagaaattaggtcttgttctttgtgagcttttaagttgatttct 3047350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 2580299 - 2580199
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttcttt-gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaac 260  Q
    ||||||||||||||||| |  ||||||| || ||| || ||||| |||| |||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  2580299 ttgttgttgttgcttgaagacactttacacattgattaccacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaac 2580200  T
Q  261 a 261  Q
    |    
T  2580199 a 2580199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 5817461 - 5817559
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||| |||||||||||||   || ||| ||  |||| ||||||| ||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  5817461 ttgttgttgttgtttgatgctactttgtccattgattaatacttactttgcttcacacatctttgttttattgatgtgattttgtacgaattcacaaca 5817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 29159762 - 29159612
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 211  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| | |||    
T  29159762 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcccttt 29159665  T
Q  212 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 262  Q
    ||||||||||||||||||  | |||||||||||||||| |||||| |||||||    
T  29159664 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacag 29159612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 9190152 - 9190298
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-tttgctcca 217  Q
    |||||||||||||||||| ||||  ||||| ||| |   || | ||||||||||||||||  |  ||||||| || ||| || ||||| | |||||||||    
T  9190152 tatgcttgtggtgttgctctacacttagatctaggt---ttgttttgttgttgttgcttggagacactttacacattgattaccacttccttttgctcca 9190248  T
Q  218 cacatctttg--tttgattggtgtgattttgtccgaattaacaacagata 265  Q
    ||||||||||  ||| ||||||||||||||| ||||||| ||||||||||    
T  9190249 cacatctttgtttttcattggtgtgattttgaccgaattcacaacagata 9190298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 49091621 - 49091472
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  || || ||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  49091621 tttgattatgcttgtggtgttgctctacacttaaatctaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcctttg 49091524  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 261  Q
    ||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  49091523 ctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 49091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 2647610 - 2647698
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  2647610 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttct 2647698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 5817183 - 5817257
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagct 392  Q
    |||| ||||||||||||||| |||||||  |||||| |||||||| ||||| ||| || || |||||||||||||    
T  5817183 ttttttcttaggattcattgagagtgtgagtgacttgaaaaatggatagaaattaggttttgttctttgtgagct 5817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 9185307 - 9185449
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt-gctcca 217  Q
    ||||||||||||||| || ||||  ||||| ||| ||| ||||   ||||||||||||||  |  ||||||| || ||| || ||||| |||| ||||||    
T  9185307 tatgcttgtggtgtttctctacacttagatctaggtctgtttt---gttgttgttgcttggagacactttacacattgattaccacttccttttgctcca 9185403  T
Q  218 cacatctttg--tttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||  ||| ||| ||||||||||| ||||||| ||||||    
T  9185404 cacatctttgtttttcattagtgtgattttgaccgaattcacaaca 9185449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 45685658 - 45685733
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagctt 393  Q
    |||||||||||||||||||| || | ||  ||||||||||||||| ||||| |||||  || |||||||| |||||    
T  45685658 ttttctcttaggattcattgcgactttgagtgacttaaaaaatggatagaaattaaggtttgttctttgtcagctt 45685733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 2580574 - 2580524
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    |||||||||||||||||||| |||||||| |||  | ||||||||||||||    
T  2580574 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaa 2580524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 20284273 - 20284183
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| |||  | ||||| |||||||| ||| | ||| ||| ||||| ||||| |||| ||||||||    
T  20284273 ttttctcttaggattcattgagagtgtgggtgatatgaaaaaagggtagaaattaggacttgttcttttgtaagcttataagctaatttct 20284183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 23402926 - 23403016
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||  |||  | |||||||||||||| ||| | ||| ||| ||||| ||||| |||| ||||||||    
T  23402926 ttttctcttaggattcattgagagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttct 23403016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 21988817 - 21988733
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatc--tttgtttgattggtgtgatttt 245  Q
    |||||||||||||||| ||  ||||||| || ||| || ||||| ||||||||||||||||  | | ||| ||||||||||||||    
T  21988817 ttgttgttgttgcttggtgacactttacacattgattaccacttcctttgctccacacatcattatttttcattggtgtgatttt 21988733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 2647962 - 2648013
Alignment:
Q  212 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||||  | ||||||||||||||||| ||||| ||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 2648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 28617175 - 28617227
Alignment:
Q  355 aaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||| ||||||| ||| || || ||||||||||||||||||| ||||||||    
T  28617175 aaaaataggtagaaattaggttttgttctttgtgagcttttaagctaatttct 28617227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 33332675 - 33332734
Alignment:
Q  202 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaa 259  Q
    ||||| ||||| |||||||||||| |||  | ||||||||||||||||||||||| ||||    
T  33332675 cacttcctttggtccacacatcttggttattcattggtgtgattttgtccgaattcacaa 33332734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 112 - 261
Target Start/End: Original strand, 5990698 - 5990843
Alignment:
Q  112 ttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt 211  Q
    ||||||||||||||||||| ||| | ||||  ||||||||| |||||||    |||||||||||||||||||||||||  || ||| ||  |||| ||||    
T  5990698 ttttgaatatgcttgtggttttgttctacacttagatttaggtctattt----gttgttgttgcttgatgctactttatccattgattactacttccttt 5990793  T
Q  212 gctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||| ||||||    
T  5990794 gctccgcacatctttgttttattgatgtgattttgtcggaattcacaaca 5990843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 7493210 - 7493352
Alignment:
Q  124 ttgtggtgttgctttacaaatagatttagatctattt-----tattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    ||||||||||||| ||||  |||||||||||||||||     | |||||| || |||||||  ||||||||| || ||| ||  |||| |||||||||||    
T  7493210 ttgtggtgttgctctacacttagatttagatctatttgttgttgttgttgctgctgcttgagactactttacacattgattactacttcctttgctccac 7493309  T
Q  219 acatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||| | |||| ||||||||||||||||||||||| ||||||    
T  7493310 acatcatagttttattggtgtgattttgtccgaattcacaaca 7493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 9765958 - 9766106
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| | | ||||  |||||||||||||||  |  ||||||   | ||| |||||||| |||||    
T  9765958 tttgattatgcttgtggtgttgctctacacttagatttaggtttgtttt--tgttgttgttgcttggagacactttatctattgattatcacttcctttg 9766055  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||  || ||||||||||||||||| ||||| ||||||    
T  9766056 ctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 9766106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 9054750 - 9054839
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||  |||||| |||||||||||||| |||  | || ||||||||| ||||||||| ||||||||    
T  9054750 ttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattagattttgttctttgtgcgcttttaagctaatttct 9054839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 5990474 - 5990563
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||  ||||||| |||||| ||||||||||  || | | ||| | ||||||||||||||||||| ||||||||    
T  5990474 ttttctcttaggattcattgaaagtgtgggtgacttgaaaaatgggtgaaaatgaggtcgtgttctttgtgagcttttaagctaatttct 5990563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 3051303 - 3051215
Alignment:
Q  319 tttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||| ||||||   |||| | |||||||||||||| |||||| || ||||||||||||| ||| | ||||||||    
T  3051303 tttctcttaggattcattgagagtgtaagtgacatgaaaaatgggtagaaattaagttttgttctttgtgagctcttatgctaatttct 3051215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 6127179 - 6127029
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 211  Q
    ||||| |||||||||||||||||| ||||  || ||||| |||| |||| ||||||||||||||||  |  |||| |   | ||| || ||||| ||||     
T  6127179 tttgattatgcttgtggtgttgctctacacttaaatttatatctgtttt-ttgttgttgttgcttggagacacttaatctattgattaccacttcctttt 6127081  T
Q  212 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  6127080 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 6127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 5702627 - 5702757
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    ||||||||||||| |||| ||||  ||||| ||| ||| ||||  ||||||||||||| |  |  |||||| ||| ||| || |||||  ||||||||||    
T  5702627 tatgcttgtggtgatgctctacacttagatctaggtctgtttt--tgttgttgttgctaggagacactttattcattgattaccacttcatttgctccac 5702724  T
Q  219 acatctttgt--ttgattggtgtgattttgtcc 249  Q
    ||||||||||  || ||||||||||||||||||    
T  5702725 acatctttgttattcattggtgtgattttgtcc 5702757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 6813543 - 6813489
Alignment:
Q  208 ctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  6813543 ctttgctcaacacatctttgttttcattggtgtgattttgtccgaattcacaaca 6813489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 31513245 - 31513279
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgact 352  Q
    |||||||||||||||||||||||||||||||||||    
T  31513245 ttttctcttaggattcattgtgagtgtggatgact 31513279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 7493086 - 7493175
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||| |||||||||| |||| |||||||| |||||| |||||  ||||||| ||| || || |||| |||||||||||| | ||||||||    
T  7493086 ttttttcttaggatttattgagagtgtgggtgacttgaaaaacaggtagaaattaggttttgttctgtgtgagcttttatgttaatttct 7493175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 28307421 - 28307368
Alignment:
Q  209 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||| ||||||    
T  28307421 tttgctccacacatctttgttttcattggtgtgattttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 23799803 - 23799863
Alignment:
Q  202 cactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||||||| ||| |||  |||||||||||||||| |||||| ||||||    
T  23799803 cactttctttgctccacacatattttttttcattggtgtgattttgtacgaattcacaaca 23799863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 26403368 - 26403515
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 211  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  ||||||| |||||||  |  || |||   | ||| || ||||| ||||     
T  26403368 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttattgcttggagacacattatctattgattaccacttcctttt 26403465  T
Q  212 gctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaa 259  Q
    |||||||||||||||||  || ||||||||| ||||||||||||| ||||    
T  26403466 gctccacacatctttgttattcattggtgtggttttgtccgaattcacaa 26403515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 28307746 - 28307667
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaa 397  Q
    |||||| |||||||||| || |||||||| |||||| | ||||| ||||||  || ||||| |||||| |||||||||||    
T  28307746 ttttcttttaggattcagtgagagtgtgggtgacttgagaaatgtgtagaaagtaggtcttgttctttatgagcttttaa 28307667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 19752306 - 19752356
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    |||||||||||||||||||| |||||||| |||  | ||||||||||||||    
T  19752306 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaa 19752356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 26287767 - 26287706
Alignment:
Q  209 tttgctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaacagatatat 268  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||| |||||| ||||||    
T  26287767 tttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaatatat 26287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 26313018 - 26312957
Alignment:
Q  209 tttgctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaacagatatat 268  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||| |||||| ||||||    
T  26313018 tttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaatatat 26312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 42127545 - 42127695
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||||||||||||||||| ||||| ||||||||  ||| ||||   ||||||||||||||  |  ||||||  || ||| || ||||||||    
T  42127545 tgttttgattatgcttgtggtgttgctctacaattagatttaagtctgtttt---gttgttgttgcttggagacactttatccattgattaccactttct 42127641  T
Q  210 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||||  || ||| ||||||||||||||||||| ||||||    
T  42127642 ttgctccacacatctttgttattcattagtgtgattttgtccgaattcacaaca 42127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 33030854 - 33030942
Alignment:
Q  319 tttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||| |||||||  |||||| |||||||||||||| ||| || || ||||||||||||||||||| ||||||||    
T  33030854 tttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttctttgtgagcttttaagctaatttct 33030942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 19588705 - 19588556
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |   |||||   | ||| || ||||| |||||    
T  19588705 tttgattatgcttgtggtgttgctctacacttagatttaggtctttttt--tgttgttgttgcttggagacgctttatctattgattaccacttcctttg 19588608  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 262  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  19588607 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 19588556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 7160817 - 7160892
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttt 394  Q
    |||||||||||||||||||| |||||| | |||||||||||||  |||||| ||||||||| |||||||||||||||    
T  7160817 ttttctcttaggattcattgagagtgtag-tgacttaaaaaatatgtagaaattaagtcttgttctttgtgagcttt 7160892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 28832218 - 28832071
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  |||||| || ||| ||||  |||||||||||||||| |  ||||||  || ||| || ||||| |||||    
T  28832218 tttgattatgcttgtggtgttgctctacacttagatt-aggtctgtttt--tgttgttgttgcttgaagacactttatccattgattaccacttcctttg 28832122  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||  || |||||| ||||||||||||| || ||||||    
T  28832121 ctccacacatctttgttattcattggtatgattttgtccgatttcacaaca 28832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 11181970 - 11182120
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||| ||||| ||||  ||||||||  ||| |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  11181970 tttgattatgcttgtggtattgctctacacttagatttaagtctgtttttttgttgttgttgcttggagacactttatctattgattaccacttactttg 11182069  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||  || |||||||||||||||| | |||| ||||||    
T  11182070 ctccacacatctttgttattcattggtgtgattttgttcaaattcacaaca 11182120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 14520182 - 14520056
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    |||||||||||||||||| ||||  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||    
T  14520182 tatgcttgtggtgttgctctacacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttgctccac 14520085  T
Q  219 acatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||  || ||||||||||||||    
T  14520084 acatctttgttattcattggtgtgatttt 14520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 11181745 - 11181834
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||||||||||| |||| |  ||||||||||||| ||| ||||| ||| |||| ||||||||| | ||||||||    
T  11181745 ttttctcttaggattcattgtgagtgtgggtgacat-gaaaatgggtagaaattaggtcttgttcatttgagagcttttaggctaatttct 11181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 3880259 - 3880112
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 211  Q
    ||||| |||||||||||||||||||||||  ||||||||| ||| ||||     |||||||| |||| |  ||||||   | ||| || ||||| ||||     
T  3880259 tttgattatgcttgtggtgttgctttacacttagatttaggtctgtttt-----tgttgttgattgaagacactttatctattgattaccacttcctttt 3880165  T
Q  212 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 262  Q
    ||||||||||||||||||  | |||||||||||||||| |||||| |||||||    
T  3880164 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacag 3880112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 6742036 - 6741947
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||| ||||||||||||||| |||||||| |||||| ||||||| |||||| ||| || || ||||||||||| ||  ||| ||||||||    
T  6742036 ttttttcttaggattcattgagagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagtttgcaagctaatttct 6741947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 10281732 - 10281673
Alignment:
Q  204 ctttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| |||| ||||||    
T  10281732 ctttctttgctccacacatctttgttattcattggtgtgattttgtccaaattcacaaca 10281673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 2630415 - 2630328
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaattt 405  Q
    |||||||||||||||||||||||||| || |||||| |||||||  || || ||| || || ||||||||| | ||||||| ||||||    
T  2630415 ttttctcttaggattcattgtgagtgagggtgacttgaaaaatgtataaaaattaggttttgttctttgtgtgtttttaagctaattt 2630328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 17004098 - 17004244
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 211  Q
    ||||| ||||||||||||||||||| |||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| ||||     
T  17004098 tttgattatgcttgtggtgttgctt-acacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcctttt 17004194  T
Q  212 gctccacacatctttgtttg--attggtgtgattttgtccgaattaacaa 259  Q
    ||||||||| |||||||||   ||||||||||||||||||||||| ||||    
T  17004195 gctccacacctctttgtttttcattggtgtgattttgtccgaattcacaa 17004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 34842558 - 34842434
Alignment:
Q  118 atatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctcca 217  Q
    |||||||||||||||||||| |||  ||||| ||| | | ||| |||||||||| ||||||| ||||||||||||  ||| ||  |||| |||| |||||    
T  34842558 atatgcttgtggtgttgcttcacacttagatctaggtttgttt-attgttgttgctgcttgaggctactttactc-ttgattactacttcctttactcca 34842461  T
Q  218 cacatctttgtttgattggtgtgatttt 245  Q
    |||||||  |||| ||||||||||||||    
T  34842460 cacatctaagttt-attggtgtgatttt 34842434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 42126632 - 42126693
Alignment:
Q  202 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||| |||||||||||||||||||||  || |||||||||||||| |||||||| ||||||    
T  42126632 cacttcctttgctccacacatctttgttattcattggtgtgattttatccgaattcacaaca 42126693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 6741779 - 6741654
Alignment:
Q  149 ttagatctattttattgttgttgttgcttgatgctacttt-actcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgattttg 246  Q
    |||| ||||||||  |||||| |||| |||| |||||||| ||||| ||  ||  | ||||||||||||||||||||||| ||| |||| ||| ||||||    
T  6741779 ttaggtctattttgctgttgtagttgtttgaggctacttttactcattgtttactattttctttgctccacacatctttgttttcattgatgttattttg 6741680  T
Q  247 tccgaattaacaacagatatatatga 272  Q
    || ||||| |||||||| | ||||||    
T  6741679 tctgaattcacaacagagacatatga 6741654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 28537530 - 28537430
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaac 260  Q
    |||||||||||||||||  |||||||||||| ||| ||  || || ||||||||| ||||||||||  || |||||| |||||||| || |||| |||||    
T  28537530 ttgttgttgttgcttgagactactttactcattgattactaccttttttgctccatacatctttgtaattcattggtatgattttgaccaaattcacaac 28537431  T
Q  261 a 261  Q
    |    
T  28537430 a 28537430  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 33031178 - 33031231
Alignment:
Q  208 ctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||    
T  33031178 ctttgctccacacatctttattttattggtgtgtttttgtccaaattcacaaca 33031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 36932582 - 36932635
Alignment:
Q  209 tttgctccacacatctttgttt-gattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||| ||||||    
T  36932582 tttgctccacacatctttgtttacattggtgtgagtttgtccgaattcacaaca 36932635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 19588929 - 19588841
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| || ||||| ||||  | |||| |||||||| ||| ||||| ||||| ||| ||||| |||||||||||||    
T  19588929 ttttctcttaggattcattgagattgtgggtgac--acaaaaagggtagaaattaggtcttgttcttgtgtaagcttataaggtaatttct 19588841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 10281936 - 10281846
Alignment:
Q  318 ttttctcttaggattc--attgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||  ||||||||||||| ||||  | ||||||||||||| ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  10281936 ttttctcttaggattcatattgtgagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttct 10281846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 28832441 - 28832391
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    |||||||||||||||||||| |||||||| |||  | ||||||||||||||    
T  28832441 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaa 28832391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 42127323 - 42127373
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    |||||||||||||||||||| |||||||| |||  | ||||||||||||||    
T  42127323 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaa 42127373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 15464444 - 15464343
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttcttt-gctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaa 259  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||| |||||||||||||||||||  |||||||||| |||| |||||||| ||||    
T  15464444 ttgttgttgttgcttggagacactttacacattgattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaa 15464345  T
Q  260 ca 261  Q
    ||    
T  15464344 ca 15464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 25862160 - 25862308
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  25862160 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcctttg 25862257  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  25862258 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 5112194 - 5112052
Alignment:
Q  120 atgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccaca 219  Q
    |||| ||||||||||||||||| | || |||| | || |||| |||||||||||||||||  ||  |||||||| ||| || ||||  ||||||||||||    
T  5112194 atgcctgtggtgttgctttacacaaagttttaaaactgttttgttgttgttgttgcttgagacttgtttactcattgattaccactccctttgctccaca 5112095  T
Q  220 catctttg-tttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||| |||| ||| |||||||||||||| |||||||| ||||||    
T  5112094 catttttgttttcattggtgtgattttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 1983433 - 1983577
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||| |||||||| |||||||||  ||||||||  || | ||| |||||||||||||||||  | ||||||  || ||| ||| |||| ||    
T  1983433 tgttttgattatgtttgtggtgatgctttacacttagatttaagtc-agtttgttgttgttgttgcttgaacccactttatccattgattattacttcct 1983531  T
Q  210 ttgctccacacatctttg-tttgattggtgtgattttgtccgaatt 254  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  1983532 ttgctccacacatctttgttttcatttgtgtgattttgtccgaatt 1983577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 263
Target Start/End: Complemental strand, 54867143 - 54866991
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  54867143 tttgattatgcttgtggtgttgctctacacttagatctatgtctgtttttttgttgttgttgcttggagacactttatctattgattaccacttcctttg 54867044  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacaga 263  Q
    |||||||||||||||||  | ||||||||||||||||| ||||| ||||||||    
T  54867043 ctccacacatctttgttattcattggtgtgattttgtctgaattcacaacaga 54866991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 34670578 - 34670667
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||||||||||  |||||| |||||||| ||||| ||| |  || ||||||||||||| ||||| ||||||||    
T  34670578 ttttctcttaggattcattgtgagtgtgagtgacttgaaaaatggatagaaattatgatttgttctttgtgagctattaagctaatttct 34670667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 268
Target Start/End: Original strand, 5269329 - 5269488
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatttta-ttgttgttgttgcttgatgctactttactcactgaatatcactttcttt 211  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| | ||||||  ||||||||||||||||  |  ||||||  || ||| || ||||| ||||    
T  5269329 tttgattatgcttgtggtgttgctctacacttagatctaggtatatttttgttgttgttgttgcttggagacactttatccattgattaccacttccttt 5269428  T
Q  212 gctccacacatctttgt--ttgattggtgtga-ttttgtccgaattaacaacagatatat 268  Q
    |||||||||||||||||  || ||| |||| | ||||||||||||| |||||||||||||    
T  5269429 gctccacacatctttgttatttattagtgtaatttttgtccgaattcacaacagatatat 5269488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 10047338 - 10047190
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||||||||  ||||||| |||||||  |  ||||||  || ||| || ||||| |||||    
T  10047338 tttgattatgcttgtggtgttgctctacacttagatctatgtctatttt--tgttgttattgcttggagacactttatccattgattaccacttcctttg 10047241  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||| ||||||  | ||||||||||||||||||||||| ||||||    
T  10047240 ctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 10047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 5112421 - 5112332
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||| || ||| ||||  || ||| |||| ||||||| ||||||||    
T  5112421 ttttctcttaggattcattgtgagtgtgagtgacttaaaaaataggtacaaattaggtctcgttttttatgagtttttaagctaatttct 5112332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 16624147 - 16624279
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| ||| |||||||||||||| ||||  || || ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| |||||||| |||||    
T  16624147 tttgattattcttgtggtgttgctctacacttaaatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattatcacttcctttg 16624244  T
Q  213 ctccacacatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||||||||  || ||||||||||||||    
T  16624245 ctccacacatctttgttattcattggtgtgatttt 16624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 5147639 - 5147504
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||| ||||||||||||| ||||  ||||||||| ||| ||  |||||||||||| ||||  |  ||||||| || ||| || ||||| ||    
T  5147639 tgttttgattatgtttgtggtgttgctctacacttagatttaggtctgtt--attgttgttgtttcttggagacactttacacattgattaccacttcct 5147542  T
Q  210 ttgctccacacatctttgt--ttgattggtgtgatttt 245  Q
    |||||||||||||| ||||  || ||||||||||||||    
T  5147541 ttgctccacacatcattgttattcattggtgtgatttt 5147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 38152576 - 38152641
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 178  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||||||||||||||||||||    
T  38152576 tttgattatgcttgtggtgttgctatacacttagatctaggtctgttttattgttgttgttgcttg 38152641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 260
Target Start/End: Complemental strand, 39245956 - 39245805
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| ||||| |||||||||||| ||||  ||||||||| ||| |||| |||||||||||| |||  |  ||||||   | ||| || |||||  |    
T  39245956 tgttttgattatgcctgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgtttggagacactttatctattgattaccacttcat 39245858  T
Q  210 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaac 260  Q
    | ||||||||||||||| |  || ||||||||||||||||||||||| |||||    
T  39245857 tcgctccacacatctttattattcattggtgtgattttgtccgaattcacaac 39245805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 16630818 - 16630950
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||||||||  ||||| ||| | | |||  ||||||||| ||||||  |  ||||||| || ||| || || || |||||    
T  16630818 tttgattatgcttgtggtgttgctttacacttagatctaggtttgttt--ttgttgttgctgcttggagacactttacacattgattaccagttcctttg 16630915  T
Q  213 ctccacacatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||||||||  || ||||||||||||||    
T  16630916 ctccacacatctttgttattcattggtgtgatttt 16630950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 34496009 - 34496109
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||||||||||| |||| |||   || ||| || | ||  |||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||    
T  34496009 ttgttgttgttgcttgaggctattttgtccattgattaccgctacctttgctccacacatctttgttttcattggtgtgattttgaccgaattcacaaca 34496108  T
Q  262 g 262  Q
    |    
T  34496109 g 34496109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 37781822 - 37781743
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactca 193  Q
    ||||||||||||||||||||||||| |||  ||||| ||| |||| ||| ||| |||||||| |||||| |||||||||||    
T  37781822 tttgaatatgcttgtggtgttgcttcacacttagatctaggtcta-tttgttgatgttgttgattgatgatactttactca 37781743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 37782047 - 37781957
Alignment:
Q  318 ttttctcttaggattcattgt-gagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||| ||||||||   |||||| | |||||| |||||||||||||| |||||  || ||||||||||| ||||||| ||||||||    
T  37782047 ttttctcttaagattcatttacgagtgtaggtgacttgaaaaatgggtagaaattaagatttgttctttgtgagtttttaagctaatttct 37781957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 1983214 - 1983302
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||| | |||||| ||||| || ||||| ||| || || ||||||||||||||  ||| ||||||||    
T  1983214 ttttctcttaggattcattgagagtgtaggtgacttgaaaaa-ggatagaaattatgttttgttctttgtgagcttgcaagctaatttct 1983302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 5143221 - 5143104
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||| ||||||||||| | ||||  ||||||||| ||| ||||  ||||||||||| |||  |  ||||||| || ||| || ||||| ||    
T  5143221 tgttttgattatgtttgtggtgttgttctacacttagatttaggtctgtttt--tgttgttgttgtttggagacactttacacattgattaccacttcct 5143124  T
Q  210 ttgctccacacatctttgtt 229  Q
    |||||||||||||| |||||    
T  5143123 ttgctccacacatcattgtt 5143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 25861946 - 25862035
Alignment:
Q  317 tttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||| |||||||| ||||  | ||||||||||| | ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  25861946 tttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtaggaattaggtcttgttcttgtgtaagcttataagctaatttct 25862035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 5396860 - 5396927
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 230  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  5396860 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttt 5396927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 24333675 - 24333621
Alignment:
Q  209 tttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  24333675 tttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 24333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 36175290 - 36175242
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||||||||||    
T  36175290 ttttctcataggattcattgtgagtgtg--tgacttagaaaatgggtagaa 36175242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 42599487 - 42599575
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| ||||| || ||||  | ||||||||||||| ||| ||||| ||| ||||| ||||| |||| ||||||||    
T  42599487 ttttctcttaggattcattgagagtgcgggtgac--acaaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttct 42599575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 18377543 - 18377454
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtctt-attctttgtgagcttttaaggtaatttct 407  Q
    |||| |||||||||||||||| ||||||| |||| |  ||||||||||||| ||| | |||  ||||||||||||||||||| | ||||||    
T  18377543 ttttttcttaggattcattgtaagtgtgggtgacat-gaaaatgggtagaaattagggcttgtttctttgtgagcttttaagctgatttct 18377454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 39774218 - 39774307
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttatt-ctttgtgagcttttaaggtaatttct 407  Q
    ||||||||| |||||||||| |||||||  |||| | |||| ||| ||||| ||| ||||| || ||||||||||||||||| ||||||||    
T  39774218 ttttctcttgggattcattgagagtgtgagtgacatgaaaattgg-tagaaattaggtcttgtttctttgtgagcttttaagctaatttct 39774307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 54867364 - 54867278
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||  ||||||||||||||  | ||||||||||||| ||| || || ||||| ||| ||||| |||| ||||||||    
T  54867364 ttttctcttaggattcat--tgagtgtggatgac--acaaaatgggtagaaattaggtattgttcttgtgtaagcttataagctaatttct 54867278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 22819615 - 22819539
Alignment:
Q  316 ttttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagct 392  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||| ||||| ||| |||||||||||||||||||    
T  22819615 ttttttctcttaggattcattgagagtgtgggtgacttgaaaaatggttagaaattatgtcttattctttgtgagct 22819539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 35109450 - 35109539
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||| ||||||||||||||||||||  |||||| |||| ||||||||| |||||  || ||||||||||||||||||| ||||||||    
T  35109450 ttttctcgtaggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgtgagcttttaagctaatttct 35109539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 775631 - 775483
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||  || ||||| |||||    
T  775631 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattggttaccacttcctttg 775534  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  775533 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 32736909 - 32736996
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaattt 405  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |  || |||||| ||| |||||||| ||||||    
T  32736909 ttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggtagaaattagggtttgttctttatgaacttttaagctaattt 32736996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 17345704 - 17345805
Alignment:
Q  163 ttgttgttgttgcttgatgctacttt-actcactgaatatcactttctttgctccacacatctttgtttgattggtgtgatt--ttgtccgaattaacaa 259  Q
    ||||||||||||||||| |||||||| ||||| ||| ||  |||| ||||||||||||||||||||||| ||||||||| ||  ||||||||||| ||||    
T  17345704 ttgttgttgttgcttgaggctacttttactcattgattactacttcctttgctccacacatctttgtttcattggtgtggtttcttgtccgaattcacaa 17345803  T
Q  260 ca 261  Q
    ||    
T  17345804 ca 17345805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 17345432 - 17345521
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||||| ||||||||  |||||||| ||||||||||||||||||||| ||| || || ||||||||| ||| ||| | ||||||||    
T  17345432 ttttctcttaagattcattaagagtgtgggtgacttaaaaaatgggtagaaattaggttttgttctttgtgggctcttatgctaatttct 17345521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 29651770 - 29651619
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| |||| |||||||||||| ||   |  |||||| ||| ||| || ||||| |||||    
T  29651770 tttgattatgcttgtggtgttgctctacacttagatctaagtctgtttt-ttgttgttgttgattatagacactttattcattgattaccacttcctttg 29651672  T
Q  213 ctccacacatctttgt--ttgattggtgtga-ttttgtccgaattaacaacag 262  Q
    ||||||||||||||||  || |||||||||| ||||||||||||| |||||||    
T  29651671 ctccacacatctttgttattcattggtgtgatttttgtccgaattcacaacag 29651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 40816870 - 40817020
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||| ||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  40816870 tttgattatgctcgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagacactttatctattgattaccacttcctttg 40816968  T
Q  213 ctccacacatctttgt--ttgattggtgtg-attttgtccgaattaacaaca 261  Q
    ||||||||||||||||  || |||||||||  ||||||||||||| ||||||    
T  40816969 ctccacacatctttgttattcattggtgtgttttttgtccgaattcacaaca 40817020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 13604830 - 13604909
Alignment:
Q  184 actttactcactgaatatcactttcttt-gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    ||||||| || ||| |||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  13604830 actttacacattgattatcacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 32889387 - 32889282
Alignment:
Q  123 cttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-tttgctccacaca 221  Q
    |||||||||||||| ||||  ||||||||||||| ||   |||||||| |||||||  |  ||||||| || ||| |||||||||| |||||||||||||    
T  32889387 cttgtggtgttgctctacacttagatttagatctgtt---ttgttgttattgcttggagacactttacacattgattatcactttcttttgctccacaca 32889291  T
Q  222 tctttgttt 230  Q
    |||||||||    
T  32889290 tctttgttt 32889282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 9023971 - 9024116
Alignment:
Q  114 ttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgc 213  Q
    |||| |||||||||||||||||| ||||  ||||||||| | | |||    |||||| |||||||  |||||||||  || ||| || |||||||| |||    
T  9023971 ttgattatgcttgtggtgttgctatacacttagatttaggtatgttt----gttgttattgcttggggctactttatccattgattaccactttctctgc 9024066  T
Q  214 tccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 261  Q
    ||||||| |||||||||   |||||||||||||||||  |||| ||||||    
T  9024067 tccacacttctttgtttttcattggtgtgattttgtctaaattcacaaca 9024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 11031386 - 11031433
Alignment:
Q  317 tttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggt 364  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  11031386 tttttctcttaggatacattgtgagtgtgaatgacttgaaaaatgggt 11031433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 19072889 - 19072744
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||   |  ||||||   | ||| ||  |||| ||    
T  19072889 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgcttcgagacactttatctattgattactacttcct 19072791  T
Q  210 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaatt 254  Q
    ||| |||||| ||||||||  || |||||||||||||||||||||||    
T  19072790 ttgttccacatatctttgttattcattggtgtgattttgtccgaatt 19072744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 19120779 - 19120634
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||   |  ||||||   | ||| ||  |||| ||    
T  19120779 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgcttcgagacactttatctattgattactacttcct 19120681  T
Q  210 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaatt 254  Q
    ||| |||||| ||||||||  || |||||||||||||||||||||||    
T  19120680 ttgttccacatatctttgttattcattggtgtgattttgtccgaatt 19120634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 50521288 - 50521389
Alignment:
Q  163 ttgttgttgttgcttgatgctacttt-actcactgaatatcactttctttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaa 259  Q
    |||||||||||| ||||  ||||||| ||||| ||| || ||||| |||| |||||||||||||| |||   |||| |||||||||||||||||| ||||    
T  50521288 ttgttgttgttgtttgagactacttttactcattgattaccacttcctttactccacacatctttattttttattgatgtgattttgtccgaattcacaa 50521387  T
Q  260 ca 261  Q
    ||    
T  50521388 ca 50521389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 9022817 - 9022857
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaa 358  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  9022817 ttttctcttaggattcattgtgagtgtggttgacttgaaaa 9022857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 9023789 - 9023839
Alignment:
Q  355 aaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaattt 405  Q
    |||| ||||||||| ||| ||||||||||||||||||||||| | ||||||    
T  9023789 aaaagtgggtagaaattaggtcttattctttgtgagcttttatgctaattt 9023839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 407
Target Start/End: Complemental strand, 10997141 - 10997051
Alignment:
Q  317 tttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||| ||||||||||  ||||||| || |||||| |||||||||||||| ||| |  || || ||||| | |||||||| ||||||||    
T  10997141 tttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttct 10997051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 21536714 - 21536839
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    |||||||||||||||||| ||||   || | ||| ||||||||  ||||||||||| |||  |  ||||||| || ||| || ||||| |||||||||||    
T  21536714 tatgcttgtggtgttgctctacagtaag-tctaggtctatttt--tgttgttgttgattggagacactttacacattgattaccacttcctttgctccac 21536810  T
Q  219 acatctttg--tttgattggtgtgatttt 245  Q
    |||||||||  ||| ||||||||||||||    
T  21536811 acatctttgtttttcattggtgtgatttt 21536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 32889624 - 32889574
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    |||||||||||||||||||| |||||||| |||  | ||||||||||||||    
T  32889624 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaa 32889574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 26645083 - 26645166
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattt 244  Q
    ||||||||||||||| | |  ||||||| || ||| || |||||  ||||||||||||||||||||  || |||||||||||||    
T  26645083 ttgttgttgttgcttaaagacactttacacattgattaccacttcatttgctccacacatctttgttattcattggtgtgattt 26645166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 40816729 - 40816816
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||   | ||||| |||||| ||| ||||| ||| ||||| ||||| |||| ||||||||    
T  40816729 ttttctcttaggattcattgagagtgtgggtgac---acaaatgagtagaaattaggtcttgttcttttgtaagcttataagctaatttct 40816816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 31979472 - 31979323
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||| ||||||| ||||  ||||||||| ||| ||||  |||||||||||||||| |  ||||||   | ||| || ||||| |||||    
T  31979472 tttgattatgcttgtgatgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttgaagacactttatctattgattaccacttcctttg 31979375  T
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 262  Q
    |||||||||||||||||  | | ||||||||||||||||||||| |||||||    
T  31979374 ctccacacatctttgttatttagtggtgtgattttgtccgaattcacaacag 31979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 5572740 - 5572882
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    |||||||||||||||||| ||||  ||||||||  ||| ||||  || ||||||||||||  |  ||||||   | ||| || ||||| |||||||||||    
T  5572740 tatgcttgtggtgttgctctacacttagatttatgtctgtttt--tgctgttgttgcttggagacactttatctattgattaccacttcctttgctccac 5572837  T
Q  219 acatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||  | ||||||||||||||||||||||| ||||||    
T  5572838 acatctttgttattcattggtgtgattttgtccgaattcacaaca 5572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 10077303 - 10077452
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  10077303 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccacttcctttg 10077400  T
Q  213 ctccacacatctttg--tttgattggtgtgattttgtccgaattaacaacag 262  Q
    ||||||||||||| |   || ||| ||||||||||||||||||| |||||||    
T  10077401 ctccacacatcttcgctattcattagtgtgattttgtccgaattcacaacag 10077452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 27165614 - 27165513
Alignment:
Q  163 ttgttgttgttgcttgatgctacttta-ctcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||  |||||||  |||| ||| ||  |||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||| ||    
T  27165614 ttgttgttgttgcttgagactacttttgctcattgattacgacttcctttgctccacacatctttgttatattggtgtaattttgtacgaattaacatca 27165515  T
Q  262 ga 263  Q
    ||    
T  27165514 ga 27165513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 22963659 - 22963526
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||  |  |||||| | | ||| || ||||| ||| |    
T  22963659 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttggagacactttattaattgattaccacttccttag 22963561  T
Q  213 ctccacacatctttgtttg-attggtgtgattttg 246  Q
    ||||||||||| | ||||| |||||||||||||||    
T  22963560 ctccacacatcatagtttgtattggtgtgattttg 22963526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 23824734 - 23824867
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||  |  |||||| | | ||| || ||||| ||| |    
T  23824734 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttggagacactttattaattgattaccacttccttag 23824832  T
Q  213 ctccacacatctttgtttg-attggtgtgattttg 246  Q
    ||||||||||| | ||||| |||||||||||||||    
T  23824833 ctccacacatcatagtttgtattggtgtgattttg 23824867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 21355949 - 21355882
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 230  Q
    ||||||||||||||||| |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  21355949 ttgttgttgttgcttgaagacactttacacattgattaccacttcctttgctccacacatctttgttt 21355882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 31979697 - 31979608
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||   |||||||||||||| ||| ||||| ||| ||||| ||||| |||| ||||||||    
T  31979697 ttttctcttaggattcattgagagtgtgggtgac-acaaaaatgggtagaaattaggtcttgttcttttgtaagcttataagttaatttct 31979608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 99339 - 99251
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||| ||||||||||||||||||||  | |||| |||||||||||||| ||||   || |||| ||||||||| |||| ||||||||    
T  99339 ttttctcataggattcattgtgagtgtgagtaactt-aaaaatgggtagaaattaaagtttgttctctgtgagcttctaagctaatttct 99251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 1115017 - 1115106
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||  ||||||||||||||||| |||||| |||||||| ||||| ||| |  || || ||| |||||||||||| | ||||||    
T  1115017 ttttctcttaatattcattgtgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttgagcttttaagttgatttct 1115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 5017606 - 5017724
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgtt--gttgttgcttgatgctactttactcactgaatatcactttctt 210  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| || ||  |||||||||||  |  ||||||  || ||| || ||||| |||    
T  5017606 tttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttttttttgttgttgcttggagacactttatccattgattaccacttcctt 5017705  T
Q  211 tgctccacacatctttgtt 229  Q
    |||||||||||||||||||    
T  5017706 tgctccacacatctttgtt 5017724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 5572155 - 5572243
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||  | |||||| |||||| ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  5572155 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgcgtagaaattaggtcttgttcttgtgtaagcttataagctaatttct 5572243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 31086687 - 31086749
Alignment:
Q  202 cactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 261  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  31086687 cacttcctttgctccacacatctttgttcttcattggtgtgattttgtaccgaattcacaaca 31086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 14521857 - 14521783
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagct 392  Q
    ||||||||||||||| |||| |||||||| |||| | ||||||| |||||| ||| ||  | |||||||||||||    
T  14521857 ttttctcttaggatttattgagagtgtgggtgacatgaaaaatgtgtagaaattaggttgtgttctttgtgagct 14521783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 31077146 - 31077240
Alignment:
Q  167 tgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||| |||||||| ||||||||||||| ||| ||  | || |||| ||| ||||||||| |||| |||| |||||||||||  ||||| ||||||    
T  31077146 tgttattgcttgaggctactttactcattgattactatttccttttctctacacatcttcgtttcattgatgtgattttgttggaattcacaaca 31077240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 31936761 - 31936711
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaa 368  Q
    |||||||||||||||||||| |||||||| |||  | ||||||||||||||    
T  31936761 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaa 31936711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 21801257 - 21801346
Alignment:
Q  318 ttttctcttaggattcatt-gtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||| |||||| | |||||||| ||||  | ||||||||||||| ||||||||| ||| ||||| ||||| |||| ||||||||    
T  21801257 ttttctcttagggttcatttgagagtgtgggtgac--acaaaatgggtagaaattaagtcttgttcttttgtaagcttataagataatttct 21801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 21801584 - 21801627
Alignment:
Q  213 ctccacacatctttgtt--tgattggtgtgattttgtccgaatt 254  Q
    |||||||||||||||||  | |||||||||||||||||||||||    
T  21801584 ctccacacatctttgttattcattggtgtgattttgtccgaatt 21801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 31936540 - 31936414
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-tttgctcca 217  Q
    |||||||||||||||||| ||||  | |||| || ||| ||   ||||||||||||||||  |  ||||||| || ||| || ||||| | |||||||||    
T  31936540 tatgcttgtggtgttgctctacactttgattaaggtctgtt---ttgttgttgttgcttggagacactttacacattgattaccacttccttttgctcca 31936444  T
Q  218 cacatctttg--tttgattggtgtgatttt 245  Q
    ||||||||||  ||| ||||||||||||||    
T  31936443 cacatctttgtttttcattggtgtgatttt 31936414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 261
Target Start/End: Complemental strand, 48438176 - 48438025
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 209  Q
    |||||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||||||||  | |||||||   | ||| || || || ||    
T  48438176 tgttttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttgcttggagatactttatctattgattaccatttcct 48438079  T
Q  210 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||| ||||  || |||| |||||||||||||||||| ||||||    
T  48438078 ttgctccacacatccttgttattcattgatgtgattttgtccgaattcacaaca 48438025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 18554502 - 18554563
Alignment:
Q  202 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||    
T  18554502 cactttctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 18554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 27038249 - 27038100
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||||||| |||  ||||||||||||||||| |  ||||||| || ||| || || ||  ||||    
T  27038249 tttgattatgcttgtggtgttgctctacacttagatctagatctgttt--ttgttgttgttgcttgaagacactttacacattgattaccatttcatttg 27038152  T
Q  213 ctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 261  Q
    ||||||||||||| ||  || |||||||||||||| | ||||||| ||||||    
T  27038151 ctccacacatcttagttattcattggtgtgattttttaccgaattcacaaca 27038100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 4387102 - 4387186
Alignment:
Q  158 ttttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgat 242  Q
    |||| |||||||||||||||   ||||||||||||| ||| ||  |||||||||||||||||||| ||||||| |||||| ||||    
T  4387102 tttttttgttgttgttgcttatggctactttactcattgattactactttctttgctccacacatttttgtttcattggtatgat 4387186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 40592911 - 40593063
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  | ||||  || ||| || ||||| |||||    
T  40592911 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacattttatccattgattaccacttcctttg 40593008  T
Q  213 ctccacacatctttgt-----ttgattggtgtgattttg-tccgaattaacaaca 261  Q
    ||||||||||||||||     || ||||||||||||||| |||||||| ||||||    
T  40593009 ctccacacatctttgttgttattcattggtgtgattttgttccgaattcacaaca 40593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 4387249 - 4387307
Alignment:
Q  203 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 261  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||  ||||||||||||    
T  4387249 acttcctttgctccacacatctttgtttcattgctgtgattttgtaggaattaacaaca 4387307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 4386851 - 4386919
Alignment:
Q  339 gagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    |||||||| |||||| ||||||| |||||| ||| || || ||||||||||||||||||| ||||||||    
T  4386851 gagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagcttttaagctaatttct 4386919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 30709919 - 30710051
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| ||||||| |||||||||| || |  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| || ||||| |||||    
T  30709919 tttgattatgcttatggtgttgctctaaacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttg 30710016  T
Q  213 ctccacacatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||||||||  || ||||||||||||||    
T  30710017 ctccacacatctttgttattcattggtgtgatttt 30710051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 18552787 - 18552875
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  18552787 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttct 18552875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 25795964 - 25795876
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||| ||||| ||||| |||| ||||||||    
T  25795964 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttct 25795876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 27986574 - 27986720
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 211  Q
    |||| ||||||||||||||||||| ||||  |||| | || ||||||||  |||||||||||||||| |  ||||||| ||  || || ||||| ||||     
T  27986574 tttgtatatgcttgtggtgttgctctacac-tagact-aggtctatttt--tgttgttgttgcttgaagacactttacacatagattaccacttcctttt 27986669  T
Q  212 gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    |||||| ||||||||||||  |||||||||| |||||||||||| ||||||    
T  27986670 gctccatacatctttgtttacattggtgtgagtttgtccgaattcacaaca 27986720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 40844834 - 40844746
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctt-tgtgagcttttaaggtaatttct 407  Q
    |||||||||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||||| ||| ||||| |||| ||||||||    
T  40844834 ttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttct 40844746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 3323778 - 3323839
Alignment:
Q  202 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| |||||| ||||||    
T  3323778 cacttcctttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 3323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 6794927 - 6794988
Alignment:
Q  202 cactttctttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 261  Q
    ||||| |||||||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  6794927 cacttcctttgctccacacatcgttgtttttcattggtgtgattttgtccgaattcacaaca 6794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Complemental strand, 25517159 - 25517077
Alignment:
Q  325 ttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||| |||| ||||||||||| |||||| ||||||  |||||| ||| |  || ||||||||||||||||||| ||||||||    
T  25517159 ttagggttcactgtgagtgtgggtgacttgaaaaataagtagaaattagggtttgttctttgtgagcttttaagctaatttct 25517077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 36029058 - 36028932
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    |||||||||||||||||| || |  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| || |||||  ||||||||||    
T  36029058 tatgcttgtggtgttgctctatacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcatttgctccac 36028961  T
Q  219 acatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||  || ||||||||||||||    
T  36028960 acatctttgttattcattggtgtgatttt 36028932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 1417665 - 1417753
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttg--tttgattggtgtgattttgtcc 249  Q
    ||||||||||||||||| |  ||||||   | ||| || ||||| ||||||||||||||||||||  ||| ||||||||||||||||||    
T  1417665 ttgttgttgttgcttgaagacactttatctattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattttgtcc 1417753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 27026904 - 27026772
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| ||||  | |||||||||||||  |  ||||||| || ||| || || ||  ||||    
T  27026904 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt--tcttgttgttgcttggagacactttacacattgattaccatttcatttg 27026807  T
Q  213 ctccacacatctttgt--ttgattggtgtgatttt 245  Q
    ||||||||||||||||  || ||||||||||||||    
T  27026806 ctccacacatctttgttattcattggtgtgatttt 27026772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 37466157 - 37466102
Alignment:
Q  208 ctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||||||| ||||||||||||  | ||||||||||||||||||||||| ||||||    
T  37466157 ctttgctcctcacatctttgttatttattggtgtgattttgtccgaattcacaaca 37466102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 1417393 - 1417460
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattcttt 385  Q
    |||||||||||||||||||| |||||||| |||  | |||||||||||||| ||| | ||| ||||||    
T  1417393 ttttctcttaggattcattgggagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttt 1417460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 1417177 - 1417088
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgtccg 250  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||| |||||||||||||| |  || |||||||||||||||||||    
T  1417177 ttgttgttgttgcttggagacactttacacattgattaccacttcctttactccacacatctttattattcattggtgtgattttgtccg 1417088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 2074938 - 2074881
Alignment:
Q  208 ctttgctccacacatctttgtttgattggtgtgatttt--gtccgaattaacaacaga 263  Q
    |||||||||||||||| | |||| ||||||||||||||  ||||||||| ||||||||    
T  2074938 ctttgctccacacatcatagttttattggtgtgattttgggtccgaattcacaacaga 2074881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 3328259 - 3328349
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||||||| ||||| |||||||| |||  | |||||||||||||| ||| | ||| ||| ||||| ||||| |||| ||||||||    
T  3328259 ttttctcttaggatacattgagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttct 3328349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 8126814 - 8126725
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattc-tttgtgagcttttaaggtaatttct 407  Q
    |||||||||| ||||||||| |||||||| ||||  ||||| ||||||||| |||||| || ||| ||||| ||||| |||| ||||||||    
T  8126814 ttttctcttaagattcattgagagtgtgggtgacacaaaaa-tgggtagaaattaagtattgttcttttgtaagcttataagctaatttct 8126725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 8370615 - 8370726
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 212  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||||||||  |  ||||||| || ||| || | ||| ||||     
T  8370615 tttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttgcttggagacactttacacattgattacctcttccttta 8370712  T
Q  213 ctccacacatcttt 226  Q
    ||||||||||||||    
T  8370713 ctccacacatcttt 8370726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 35925445 - 35925326
Alignment:
Q  109 gtgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc 208  Q
    ||||||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||| ||||  |  | ||||| || ||| || ||| | |    
T  35925445 gtgttttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttacttggagacattttacacattgattaccacctgc 35925348  T
Q  209 tttgctccacacatctttgttt 230  Q
    ||||||||||| ||||||||||    
T  35925347 tttgctccacatatctttgttt 35925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 3328481 - 3328547
Alignment:
Q  110 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 178  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||| ||||    
T  3328481 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgtttcttg 3328547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 25929299 - 25929332
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgac 351  Q
    ||||||||||||||||||||||||||||| ||||    
T  25929299 ttttctcttaggattcattgtgagtgtgggtgac 25929332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 24695068 - 24695133
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattcttt 385  Q
    |||||| ||||||||||||| |||||||| ||||  | ||||||||||||| ||| ||||| ||||||    
T  24695068 ttttcttttaggattcattgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttt 24695133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 33386842 - 33386942
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttg-ctccacacatctttgttt-gattggtgtgattttgtccgaattaacaac 260  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| ||||  ||||||||||||||||||  |||||||||| |||||||| ||| |||||    
T  33386842 ttgttgttgttgcttggagacactttacacattgattaccacttccttttactccacacatctttgtttacattggtgtgagtttgtccggattcacaac 33386941  T
Q  261 a 261  Q
    |    
T  33386942 a 33386942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 29620 - 29778
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgt------tgttgttgcttgatgctactttactcactgaatatcactt 206  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| ||||      |||||||| |||| | ||||||||||| ||| || |||||    
T  29620 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttgttgttggttgaggatactttactcattgattaccactt 29719  T
Q  207 tctttgctccacacatctttg--tttgattggtgtga-ttttgtccgaattaacaacag 262  Q
     ||||||| ||||||| ||||  ||| |||||||||| ||||| ||||||| |||||||    
T  29720 cctttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaacag 29778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 43224 - 43066
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgct------tgatgctactttactcactgaatatcactt 206  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| |||||||||||| |      ||| | ||||||||||| ||| || |||||    
T  43224 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttgttgttggttgaggatactttactcattgattaccactt 43125  T
Q  207 tctttgctccacacatctttg--tttgattggtgtga-ttttgtccgaattaacaacag 262  Q
     ||||||| ||||||| ||||  ||| |||||||||| ||||| ||||||| |||||||    
T  43124 cctttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaacag 43066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 23483 - 23357
Alignment:
Q  118 atatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctcca 217  Q
    ||||||||||||||||||||||||  ||| |||| | || ||   |||||||| |||||||| | || |||||||| ||| || ||||| |||||||| |    
T  23483 atatgcttgtggtgttgctttacacttagttttataactgtt---ttgttgttattgcttgaggatattttactcattgattaccacttcctttgctcaa 23387  T
Q  218 cacatcttt--gtttgattggtgtgatttt 245  Q
    |||||||||   ||| ||||||||||||||    
T  23386 cacatctttactttttattggtgtgatttt 23357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 23715 - 23627
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||||||||||||||||||||||  |||| |  ||||||||||||| |||  |||| || ||||||||||| ||||  |||||||    
T  23715 ttttctcttaggattcattgtgagtgtgtctgacat-gaaaatgggtagaaattagatcttgttttttgtgagcttctaagaaaatttct 23627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 133487 - 133566
Alignment:
Q  184 actttactcactgaatatcactttcttt-gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 261  Q
    ||||||| || ||| |||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  133487 actttacacattgattatcacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 10688 - 10546
Alignment:
Q  113 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactt-tcttt 211  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||   |  || || ||||| | |||    
T  10688 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagtaactttatctatcgattaccacttcttttt 10590  T
Q  212 gctccacacatctttgt--ttgattggtgtgattttgtccgaat 253  Q
    |||||||||||||||||  || |||||||||||||||| |||||    
T  10589 gctccacacatctttgttattcattggtgtgattttgtacgaat 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 102407 - 102496
Alignment:
Q  318 ttttctcttaggattcattgtgagtgtggatgacttaaaaaatgggtagaagttaagtcttattctttgtgagcttttaaggtaatttct 407  Q
    ||||||||| | ||| ||| ||||||||  |||||| |||||||||||||| ||| |  || || |||||||||||||||| ||||||||    
T  102407 ttttctcttcgaatttattatgagtgtgtgtgacttgaaaaatgggtagaaattagggtttgttttttgtgagcttttaagataatttct 102496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 44105 - 44212
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    |||||||||||||||||| ||||  |||||| || ||| ||||  |||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||    
T  44105 tatgcttgtggtgttgctctacac-tagatt-aggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttgctccac 44200  T
Q  219 acatctttgttt 230  Q
    ||||||||||||    
T  44201 acatctttgttt 44212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 37018 - 37085
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 230  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  37018 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttt 37085  T

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Target: scaffold1805 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 1319 - 1252
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 230  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  1319 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttt 1252  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 85637 - 85512
Alignment:
Q  119 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 218  Q
    |||||||||| ||||||| ||||  ||||| ||| ||| ||||||||||||||   ||||  |  ||||||| || ||| || ||||| |||||||| ||    
T  85637 tatgcttgtgatgttgctctacacttagatctaggtctgttttattgttgttg---cttggagacactttacacattgattaccacttcctttgctctac 85541  T
Q  219 acatctttg--tttgattggtgtgatttt 245  Q
    |||||||||  ||| ||||||||||||||    
T  85540 acatctttgtttttcattggtgtgatttt 85512  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 17138 - 17077
Alignment:
Q  202 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 261  Q
    ||||| |||||||||||||||||||||  || |||  |||||||||||||||||| ||||||    
T  17138 cacttcctttgctccacacatctttgttattcattcatgtgattttgtccgaattcacaaca 17077  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 45166 - 45085
Alignment:
Q  163 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgatt 243  Q
    ||||||||||||||||  |  ||||||| || ||| || |||||  ||||||||||||||||||| ||| ||||||||||||    
T  45166 ttgttgttgttgcttggagacactttacacattgattaccacttcatttgctccacacatctttgttttaattggtgtgatt 45085  T

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