View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17722_low_9 (Length: 361)
Name: NF17722_low_9
Description: NF17722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17722_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 7475551 - 7475901
Alignment:
| Q |
1 |
aagaaattgagggtttctagctatgtatcttaagttgtattgaaattttcaaattctcactctgggtctatactgttgtatcattcaataattgattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7475551 |
aagaaattgagggtttctagctatgtatcttaagttgtattgaaattttcaaattctcactctgggtctatactgttgtatcattcaataattgattctt |
7475650 |
T |
|
| Q |
101 |
aaccatttatgtattaagattgaatctctttcgaactatcctaatatagttaattttccatcttgaactgtgctcaactgaaccaatctgtactttcatg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7475651 |
aaccatttatttattaagattgaatctctttcgaactatcctaatatagttaattttccatcttgaactgtgctcaactgaaccaatctgtactttcatg |
7475750 |
T |
|
| Q |
201 |
ctaattgaatttagattgaatcctcgaagcgatatgataattcattggctcctcgaaagtttaagcctacgctcatgattttagtctcaagttcaatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7475751 |
ctaattgaatttagattgaatcctcgaagcgatatgataattcattggctcctcgaaagtttaagcctacgctcatgattttagtctcaagttcaatttc |
7475850 |
T |
|
| Q |
301 |
tatagttcaaatagtaaggtttacctttcagtccttcccctactacctatg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7475851 |
tatagttcaaatagtaaggtttacctttcagtccttcccctactacctatg |
7475901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 57 - 351
Target Start/End: Original strand, 7476104 - 7476402
Alignment:
| Q |
57 |
tcactctgggtctatactgttgtatcattcaataattgattcttaaccatttatgtattaagattgaatctctttcgaactatcctaatatagttaattt |
156 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||| ||||| ||||| ||| |
|
|
| T |
7476104 |
tcactttgggtatatactgttgtatcattcaat---tgattcttaagcatttatttattaagattgaatctcttttgaactattctaatttagttcgttt |
7476200 |
T |
|
| Q |
157 |
tccatcttga---------actgtgctcaactgaaccaatctgtactttcatgctaattgaatttagattgaatcctcgaagcgatatgataattcattg |
247 |
Q |
| |
|
||| |||||| | ||||||| | || |||||| |||||||||||| ||||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
7476201 |
tccctcttgagatacaagaattgtgctccattggaccaatttgtactttcatggtaattgagtttagattgaatcctcta-----tatgataattcattg |
7476295 |
T |
|
| Q |
248 |
gctcctcgaaagtttaagcctacgctcatgattttagtctcaagttcaatttctatagttcaaata---gtaaggtttacctttcagtccttcccctact |
344 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
7476296 |
gctcctcgaaagtttgagcctactctcatgattttagtctcaagttcaatttccgtagttcaaatactcttaaggtttacctctcagcccttcccctact |
7476395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University