View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_high_12 (Length: 408)
Name: NF17723_high_12
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 39971737 - 39971376
Alignment:
| Q |
14 |
attattctgctgggatggttatgaactgannnnnnnngttttctcatagacaaaagttacatgtaatcggtacccttttatctatatattgaattttgaa |
113 |
Q |
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| T |
39971737 |
attattctgctgggatggttatgaactgattttttttgttttctcatagacaaaagttacatttaatcggtacccttttatctatatattgaattttgaa |
39971638 |
T |
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| Q |
114 |
atccattttcaagttatatgcatattttctagcataagtaattcctgaaatttcaggtaacggaaaagtggggcggatagtgatggctgctgctgcaaaa |
213 |
Q |
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| T |
39971637 |
atccattttcaagttatatgcatattttctagcataagtaattcctgaaatttcaggtaacggaaaagtggggcggatagtgatggctgctgctgcaaaa |
39971538 |
T |
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| Q |
214 |
cacctcacaccagtcgttctggagcttggagggaaatctccaactgttgtggattcaaatgtcaatttagaggtattattaaggctctgtttggattgta |
313 |
Q |
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| T |
39971537 |
cacctcacaccagtcgttctggagcttggagggaaatctccaactgttgtggattcaaatgtcaatttagaggtattattaaggctctctttggattgta |
39971438 |
T |
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| Q |
314 |
acttatttgaacttagctattgacatgaacacttgtgagacttttgaggagagtttatgaaa |
375 |
Q |
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| T |
39971437 |
acttatttgaacttagctattgacataaacacttgtgagacttttgaggagagtttatgaaa |
39971376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 10362779 - 10362658
Alignment:
| Q |
168 |
aggtaacggaaaagtggggcggatagtgatggctgctgctgcaaaacacctcacaccagtcgttctggagcttggagggaaatctccaactgttgtggat |
267 |
Q |
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| T |
10362779 |
aggtaatggaagagtggcacgcattgtgatggctgctgctgctaagcaccttacaccagttgtgctggaacttggaggaaaatcaccagttgttgttgat |
10362680 |
T |
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| Q |
268 |
tcaaatgtcaatttagaggtat |
289 |
Q |
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|||||| |||| ||| |||||| |
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| T |
10362679 |
tcaaatatcaacttacaggtat |
10362658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 24460319 - 24460372
Alignment:
| Q |
300 |
ctgtttggattgtaacttatttgaacttagctattgacatgaacacttgtgagact |
355 |
Q |
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| T |
24460319 |
ctgtttggattg--acttatttgaacttatctactgacatgagcacttgtgagact |
24460372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 34536298 - 34536257
Alignment:
| Q |
314 |
acttatttgaacttagctattgacatgaacacttgtgagact |
355 |
Q |
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|||||||||||| || |||||||||| ||||||||||||||| |
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| T |
34536298 |
acttatttgaacgtatctattgacataaacacttgtgagact |
34536257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 1393017 - 1393057
Alignment:
| Q |
313 |
aacttatttgaacttagctattgacatgaacacttgtgaga |
353 |
Q |
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| T |
1393017 |
aacttatttgaacttatcttttgacataaacacttgtgaga |
1393057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 4757478 - 4757438
Alignment:
| Q |
314 |
acttatttgaacttagctattgacatgaacacttgtgagac |
354 |
Q |
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|||||||||| |||| |||||||||| |||||||||||||| |
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| T |
4757478 |
acttatttgagcttatctattgacataaacacttgtgagac |
4757438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 12407659 - 12407700
Alignment:
| Q |
313 |
aacttatttgaacttagctattgacatgaacacttgtgagac |
354 |
Q |
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| T |
12407659 |
aacttatttgaacttatctattgacataaacacttgtgagac |
12407700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 47041949 - 47042013
Alignment:
| Q |
292 |
ttaaggctctgtttggattgtaacttatttgaacttagctattgacatgaacacttgtgagactttt |
358 |
Q |
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|||||| | ||||||||||| |||||||||| | || |||||||||| |||||||||||||||||| |
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| T |
47041949 |
ttaaggatttgtttggattg--acttatttgagcatatctattgacattaacacttgtgagactttt |
47042013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 39502230 - 39502148
Alignment:
| Q |
196 |
atggctgctgctgcaaaacacctcacaccagtcgttctggagcttggagggaaatctccaactgttgtggattcaaatgtcaa |
278 |
Q |
| |
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|||||||||||||| || || || || ||||| |||| ||||||||||| || | |||| ||||||| |||||||||||||| |
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| T |
39502230 |
atggctgctgctgcgaagcatcttactccagtgattcttgagcttggaggaaagtgtccagctgttgttgattcaaatgtcaa |
39502148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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