View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_high_19 (Length: 329)
Name: NF17723_high_19
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 2928497 - 2928812
Alignment:
| Q |
1 |
atcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacacgcgcaacctaattaacacgaaaaccaacataaa |
100 |
Q |
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| T |
2928497 |
atcctatgtatagcataaaaccacaagttctttgttacctgttcaacaaagtgtcgagcaacaacacgcgcaacctaattaacacgaaaaccaacataaa |
2928596 |
T |
|
| Q |
101 |
ccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacctatacatattaaatcctagagttaaattacggtccacaactgca |
200 |
Q |
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| T |
2928597 |
ccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagaccta------------cctagaattaaattacggtccacaactgca |
2928684 |
T |
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| Q |
201 |
agtgcggtc---------------ataattttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaagagtcacga |
285 |
Q |
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| T |
2928685 |
agtgcggtcataatataaaatattataattttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaagagtcacaa |
2928784 |
T |
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| Q |
286 |
tgaatccgcaatcgcggccacaatttaa |
313 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
2928785 |
tgaattcgcaatcgcggccacaatttaa |
2928812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 2310569 - 2310431
Alignment:
| Q |
1 |
atcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacacgcgcaacctaattaacacgaaaaccaacataaa |
100 |
Q |
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||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2310569 |
atcctatgtatagcataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaacatgcgcaacctaattaacacgaaaaccaacataaa |
2310470 |
T |
|
| Q |
101 |
ccaataagtctctattatcattcattagctgaaattagcaagt |
143 |
Q |
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| T |
2310469 |
ctgattagtctctattat----cattagctgaaattagcaagt |
2310431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 313
Target Start/End: Complemental strand, 2310397 - 2310225
Alignment:
| Q |
151 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtcataat----------tttttacaaaaacatcacaaccgcaa |
240 |
Q |
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||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| |||| ||| ||| ||||||||| |||||||||||| |
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| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
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| Q |
241 |
ttgactacatttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaatttaa |
313 |
Q |
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||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||| |||||||| |
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| T |
2310297 |
ttgactacatttacctgaattttagtgtaatatcaagagttacaatgaatccgcaatcgcggccgcaatttaa |
2310225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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