View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_high_25 (Length: 275)
Name: NF17723_high_25
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3221218 - 3220961
Alignment:
| Q |
1 |
aagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttgctatgatccttgca |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221218 |
aagtggaaaagtagtggtgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttgctatgatccttgca |
3221119 |
T |
|
| Q |
101 |
aattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaatcaaagaatacataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221118 |
aattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaatcaaagaatacataa |
3221019 |
T |
|
| Q |
201 |
aatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattc |
258 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3221018 |
aatcaacttacaatccatcagcaacattgatattcaaaggaacagtaattggtgattc |
3220961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3231451 - 3231194
Alignment:
| Q |
1 |
aagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttgctatgatccttgca |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||| |||||||||| ||||| || |||| |||| | |
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| T |
3231451 |
aagtggaaaagtagtgttgtgtgatatcggaggacgtgttccaagcactgtgaaaggacaagaagttttaaattcaggtggtgtagcagtgattcttgta |
3231352 |
T |
|
| Q |
101 |
aattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaatcaaagaatacataa |
200 |
Q |
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|| ||||||| |||||||||||||| |||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||||| |
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| T |
3231351 |
aactcagaaagtgatggtttcagcacttttgctactgctcatgttctacctgcggttgaagtgagttacaaagctggtttaacaatcaaagattacataa |
3231252 |
T |
|
| Q |
201 |
aatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattc |
258 |
Q |
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| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
3231251 |
actcaacctacaatccaacagcaacattgatattcaaaggaacagtaattggtgattc |
3231194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 3226196 - 3225946
Alignment:
| Q |
5 |
ggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttgctatgatccttgcaaatt |
104 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||| ||| | || ||||| |||||||||| |
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| T |
3226196 |
ggaaaagtagtgctgtgtgatgt---aggaaatgtctcaagtattgtgaaaggacaagaagttctaaattcaggtggtatagcaatgatacttgcaaatt |
3226100 |
T |
|
| Q |
105 |
cagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaatcaaagaatacataaaatc |
204 |
Q |
| |
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||||| ||||||||||||| |||| ||||| |||||||||| ||||||| ||| || ||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
3226099 |
cagaagcacttggtttcagtacttttgctattgctcatgttctacctgcagttgaagtgagttatgcagctggtttaacaatcaaatcttacataaaatc |
3226000 |
T |
|
| Q |
205 |
aacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattc |
258 |
Q |
| |
|
||| |||||||| ||||||||||| |||| |||||||| ||||||||||||| |
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| T |
3225999 |
aacatacaatccgacagcaacattgatatttaaaggaacgataattggtgattc |
3225946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3240250 - 3239993
Alignment:
| Q |
1 |
aagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttgctatgatccttgca |
100 |
Q |
| |
|
|||||||||||| |||||||||||| | || | | ||||||||| |||||||||||||||||||||||||| || ||||| || |||| |||| | |
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| T |
3240250 |
aagtggaaaagttgtgttgtgtgatataggtgaagatgtttcaacctttgtgaaaggacaagaagttctaaatgcaaatggtgtagcagtgattcttgta |
3240151 |
T |
|
| Q |
101 |
aattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaatcaaagaatacataa |
200 |
Q |
| |
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|| ||||||| |||||||||||||| |||||||||||||||| | || || ||| || ||||||| ||||||||||||||||||||||| ||||| | |
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| T |
3240150 |
aactcagaaagtgatggtttcagcacttttgctactgctcatgttctgccagcagttgaagtgagttatgcagctggtttaacaatcaaagattacatta |
3240051 |
T |
|
| Q |
201 |
aatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattc |
258 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3240050 |
actcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattc |
3239993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 3178590 - 3178847
Alignment:
| Q |
1 |
aagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttgctatgatccttgca |
100 |
Q |
| |
|
|||||||||||| |||||||||||| | || | | ||||||||| |||||||||||||||||||||||||| || ||||| || |||| |||| | |
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| T |
3178590 |
aagtggaaaagttgtgttgtgtgatataggtgaagatgtttcaacctttgtgaaaggacaagaagttctaaatgcaaatggtgtagcagtgattcttgta |
3178689 |
T |
|
| Q |
101 |
aattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaatcaaagaatacataa |
200 |
Q |
| |
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|| ||||||| |||||||||||||| |||||||||||||||| | || || ||| || | ||||| ||||||||||||||||||||||| ||||| | |
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| T |
3178690 |
aactcagaaagtgatggtttcagcacttttgctactgctcatgttctgccagcagttgaagtaagttatgcagctggtttaacaatcaaagattacatta |
3178789 |
T |
|
| Q |
201 |
aatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattc |
258 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3178790 |
actcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattc |
3178847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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