View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_high_29 (Length: 246)
Name: NF17723_high_29
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 54038472 - 54038703
Alignment:
| Q |
1 |
tagttgttgtcgcttaattgcggtgggcaacataaggtgtgggaacataagggaagccagtgtggtcaaactaagtcgtgtctaagtaaaagaagataga |
100 |
Q |
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| T |
54038472 |
tagttgttgtcgtttaattgcggtgggcaacataaggtgtgggaacataagggaagccagtgtggtcaaactaagtcgtgtctaagtaaaagaagataga |
54038571 |
T |
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| Q |
101 |
tgacaattggaaact---aaagaaaagaaagatagatgaaaataggaaactgtaagataaaattgagccatttaaacagcaaagtcaaactgtactgaaa |
197 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54038572 |
tgacaattggaaactgtaaaagaaaagaaagatagatgaaaataggaaactgtaagataaaattgagccatttaaacagcaaagtcaaactgtactgaaa |
54038671 |
T |
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| Q |
198 |
acagtatgaaattcatgacataaagtaaaacc |
229 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
54038672 |
acagtatgaaattcatgacataaagtaaaacc |
54038703 |
T |
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