View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17723_high_3 (Length: 660)

Name: NF17723_high_3
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17723_high_3
NF17723_high_3
[»] chr7 (1 HSPs)
chr7 (18-649)||(48616536-48617178)


Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 48617178 - 48616536
Alignment:
Q  18 ctttataggagcattgctcaacacaatgtgtttgggttatgtgaccaaacttgtggaacaaagaatgttgaaacaagacaaaagagtagaagcatatagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48617178 ctttataggagcattgctcaacacaatgtgtttgggttatgtgaccaaacttgtggaacaaagaatgttgaaacaagacgaaagagtagaagcatatagg 48617079  T
Q  118 aagtatcagaacacaacttctgtatggatcccctgcttcaagttcaactcatcatcatatcctaatttaccactcnnnnnnnctaagaatgcctgatcca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  48617078 aagtatcagaacacaacttctgtatggatcccctgcttcaagttcaactcatcatcatatcctaatttaccactcaataaaactaagaatgcctgatcca 48616979  T
Q  218 tcttttgttgtttcttcattatgagacactgtcacttatttatattcaacttggtgggattttaaaatcgtaattctttttgtggatgaaatcaattaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48616978 tcttttgttgtttcttcattatgagacactgtcacttatttatattcaacttggtgggattttaaaatcttaattctttttgtggatgaaatcaattaat 48616879  T
Q  318 tttcaatattttatattaagtttccatatatcttttacatagataactctaatttcttacagtgaaacaaataactctactttgctttcagctaattttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48616878 tttcaatattttatattaagtttccatatatcttttacatagataactctaatttcttacagtgaaacaaataactctaatttgctttcagctaattttt 48616779  T
Q  418 aacttattattaaatcaaggaaaacgttgtttatagcgaaaagaaattcgcataatttcatgttcccgatgcct--------tttctctcactatatata 509  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  48616778 aacatattattaaatcaaggaaaacgttgtttatagtgaaaagaaattcgcataatttcatgttcccgatgccttcgcgagatttctctcactatatata 48616679  T
Q  510 t----agtctagcatgacttattctccatattacatggaaaaatttgccttgtcccggctttgaactctctaccttgaatcgcctgacatttgatctact 605  Q
    |    |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  48616678 tagtcagtctagcatgactaattctccatattacatgggaaaatttgccttgtcccagctttgaactctctaccttgaatcg-ctgacatttgatctact 48616580  T
Q  606 ccccagacgaacaaattgattggcctctttttaaccctttgctt 649  Q
    | |||||||||||||| |||||||||||||||||||||||||||    
T  48616579 caccagacgaacaaatcgattggcctctttttaaccctttgctt 48616536  T

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