View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_high_35 (Length: 227)
Name: NF17723_high_35
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38954358 - 38954136
Alignment:
| Q |
1 |
tctacttcggcaaatttagtggatgaatcttcagccaacttcttgatcaacctctgagtctcgtctcttcggataggagcgaagttgttgatacggtggt |
100 |
Q |
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| T |
38954358 |
tctacttcagcaaatttagtggatgaatcttcagccaacttcttgatcaacctctgagtctcgtctcttcggataggagcaaagttgttgatacggtggt |
38954259 |
T |
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| Q |
101 |
ttgaaagaacatcaagggaagtgatacgacgaaggttacggcagtgttcaccgtaggaggtagatcctaaagtggtataattgtagaaaatatattttcc |
200 |
Q |
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| T |
38954258 |
ttgaaagaacatcaagggaagtgatacgacgaaggttacgccagtgttcaccgtaggaggtagatcctaaagtggtgtaattgtagaaaatatattttcc |
38954159 |
T |
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| Q |
201 |
ggataaaaaccgtggtctatttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38954158 |
ggataaaaaccgtggtctatttg |
38954136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 38976187 - 38976320
Alignment:
| Q |
88 |
ttgatacggtggtttgaaagaacatcaagggaagtgatacgacgaaggttacggcagtgttcaccgtaggaggtagatcctaaagtggtataattgtaga |
187 |
Q |
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|||||||||||||||||||||||||||| | || || ||||||||||| || || ||||||||||||| || |||||||| |||||||| ||||| | |
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| T |
38976187 |
ttgatacggtggtttgaaagaacatcaattgcggtaatgcgacgaaggttgcgccaatgttcaccgtaggttgttgatcctaaggtggtatagttgtaaa |
38976286 |
T |
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| Q |
188 |
aaatatattttccggataaaaaccgtggtctatt |
221 |
Q |
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| T |
38976287 |
agatgtattttccggagagaaaacggggtctatt |
38976320 |
T |
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