View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17723_high_4 (Length: 654)

Name: NF17723_high_4
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17723_high_4
NF17723_high_4
[»] chr5 (5 HSPs)
chr5 (18-487)||(13457801-13458273)
chr5 (550-638)||(13457650-13457738)
chr5 (354-484)||(31233475-31233604)
chr5 (564-623)||(31233686-31233745)
chr5 (550-608)||(17532542-17532601)
[»] chr7 (4 HSPs)
chr7 (18-323)||(36663250-36663560)
chr7 (550-608)||(14806112-14806171)
chr7 (550-608)||(15253106-15253165)
chr7 (551-597)||(2599569-2599615)
[»] scaffold0262 (1 HSPs)
scaffold0262 (18-334)||(6549-6870)
[»] chr2 (1 HSPs)
chr2 (355-484)||(24453898-24454026)
[»] chr3 (3 HSPs)
chr3 (366-484)||(23233750-23233869)
chr3 (354-469)||(33330644-33330756)
chr3 (566-600)||(33330555-33330589)
[»] chr4 (1 HSPs)
chr4 (239-354)||(49350188-49350303)
[»] scaffold0004 (1 HSPs)
scaffold0004 (239-343)||(250495-250599)
[»] chr6 (2 HSPs)
chr6 (354-484)||(27174346-27174475)
chr6 (354-484)||(27231151-27231280)
[»] chr8 (1 HSPs)
chr8 (601-638)||(32149781-32149818)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 13458273 - 13457801
Alignment:
Q  18 gttttcgcaacacttccaagaattcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggtgatcatcgatctcatgtgatagaacaa 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13458273 gttttcgcaacacttccaagaagtcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggtaatcatcgatctcatgtgatagaacaa 13458174  T
Q  118 acacacaatactcagaatgcacccgagccggatgattgcgatagacaatcaagtctacaccatactga---gctcctgacctaccagtttttcatccgaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  13458173 acacacaatactcagaatgcacccgagccggatgattgcgatggacaatcaagtctacaccatactgatgagctcctgacctaccagtttttcatccgaa 13458074  T
Q  215 ggtgagaataggccttgtagaaacaagggaatgcatctttcttggacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatgacc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13458073 ggtgagaataggccttgtagaaacaagggaatgcatctttcttagacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatcacc 13457974  T
Q  315 attaatcttgatgcatttcagggaatagcataggtagaattgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattgaaagaca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13457973 attaatcttgatgcatttcagggaatagcataggtagaattgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattggaagaca 13457874  T
Q  415 gaaatatgtttataacatcaagcacaccattacaaacacttcagtgctctataaatagagctgaaacatatcg 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457873 gaaatatgtttataacatcaagcacaccattacaaacacttcagtgctctataaatagagctgaaacatatcg 13457801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 550 - 638
Target Start/End: Complemental strand, 13457738 - 13457650
Alignment:
Q  550 tcactaatgtctataaaaaacttaataatatcataactgaaaatactaaggaatactaagtcaatttctacaaatctcctccgtgcctt 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457738 tcactaatgtctataaaaaacttaataatatcataactgaaaatactaaggaatactaagtcaatttctacaaatctcctccgtgcctt 13457650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 354 - 484
Target Start/End: Original strand, 31233475 - 31233604
Alignment:
Q  354 ttgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattgaaagacagaaatatgtttataacatcaagcacaccattacaaacac 453  Q
    |||||||||||||| |||||| ||||||||||   ||||| ||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||    
T  31233475 ttgttggttttaaa-gggatatgagagaaaaaaatttatgaaaatgatatatttgtagacaaaaatatgtttataacatcaagcacaccattacaaacac 31233573  T
Q  454 ttcagtgctctataaatagagctgaaacata 484  Q
    ||||||||| |||||||||||||||||||||    
T  31233574 ttcagtgctttataaatagagctgaaacata 31233604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 564 - 623
Target Start/End: Original strand, 31233686 - 31233745
Alignment:
Q  564 aaaaaacttaataatatcataactgaaaatactaaggaatactaagtcaatttctacaaa 623  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  31233686 aaaaaacttaataatatcataactgcaaatactaaagaatactaaggcaatttctacaaa 31233745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 608
Target Start/End: Complemental strand, 17532601 - 17532542
Alignment:
Q  550 tcactaatgtct-ataaaaaacttaataatatcataactgaaaatactaaggaatactaa 608  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||    
T  17532601 tcactaatgtctcataaaaaacttattaatatcataactgaaaatactaaggcatactaa 17532542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 6e-82; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 36663250 - 36663560
Alignment:
Q  18 gttttcgcaacacttccaagaattcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggtgatcatcgatctcatgtgatagaacaa 117  Q
    ||||| ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| | | ||||  | ||||| ||||||||||    
T  36663250 gtttttgcaacacctccaagaagtcgagttgtgcaatgaacatcagaccatactctcaatcttccatttagatcaccatccttgtcatgagatagaacaa 36663349  T
Q  118 acacacaatactcagaatgcacccgagccggatgattgcgatagacaatcaagtctacaccatactgagctcctgacct-----accagtttttcatccg 212  Q
      |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||      ||| |||||||| |     
T  36663350 gtacaccatactcagaatgcacccgagcaggatgatggcgatagacaatcaagtctacaccatactgagcccctgacctcacaacccaatttttcattct 36663449  T
Q  213 aaggtgagaataggccttgtagaaacaagggaatgcatctttcttggacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatga 312  Q
    ||| |||||||| |||||||||||| |||||||||  |||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||  |    
T  36663450 aagatgagaataagccttgtagaaataagggaatgtttctttcttggacctgaagtaatgccacaactcttcatcatttaagggaccggtatcagcacca 36663549  T
Q  313 ccattaatctt 323  Q
     ||||||||||    
T  36663550 acattaatctt 36663560  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 14806112 - 14806171
Alignment:
Q  550 tcactaatgtct-ataaaaaacttaataatatcataactgaaaatactaaggaatactaa 608  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||    
T  14806112 tcactaatgtctcataaaaaacttattagtatcataactgaaaatactaaggcatactaa 14806171  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 15253106 - 15253165
Alignment:
Q  550 tcactaatgtct-ataaaaaacttaataatatcataactgaaaatactaaggaatactaa 608  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||    
T  15253106 tcactaatgtctcataaaaaacttattagtatcataactgaaaatactaaggcatactaa 15253165  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 2599615 - 2599569
Alignment:
Q  551 cactaatgtctataaaaaacttaataatatcataactgaaaatacta 597  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||    
T  2599615 cactaatgtctcttaaaaacataataatatcataactgaaaatacta 2599569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 6549 - 6870
Alignment:
Q  18 gttttcgcaacacttccaagaattcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggtgatcatcgatctcatgtgatagaacaa 117  Q
    ||||| |||||||||||||||| |  |||||||||| |||||||||| ||||||||||||||| ||||||  | | ||||  | ||||||||||||||||    
T  6549 gtttttgcaacacttccaagaagttgagttgtgcaaagaacatcagatcatactctcaatcttccatttaattcaccatcattgtcatgtgatagaacaa 6648  T
Q  118 acacacaatactcagaatgcacccgagccggatgattgcgatagacaatcaagtctacaccatactgagctcctgacct-----accagtttttcatccg 212  Q
      |||| ||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||  | ||||||      |||||||||||| ||    
T  6649 gtacaccatactcagaatgcacccaagccggatgatggcgataaacaataaagtctacaccatactgagaccttgacctcactacccagtttttcattcg 6748  T
Q  213 aaggtgagaataggccttgtagaaacaagggaatgcatctttcttggacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatga 312  Q
    |||||||||||| |||||||||||| |||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||       
T  6749 aaggtgagaataagccttgtagaaataagggaatgtttctttcttggacttgaagcaacaccacaactcttcatcatttaagggaccagtatcagcaccg 6848  T
Q  313 ccattaatcttgatgcatttca 334  Q
     |||||||||||| ||||||||    
T  6849 tcattaatcttgaggcatttca 6870  T

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Target: chr2 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 24454026 - 24453898
Alignment:
Q  355 tgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattgaaagacagaaatatgtttataacatcaagcacaccattacaaacact 454  Q
    ||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| | |    
T  24454026 tgttggttttata-gggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacatcaaacataccattacaaatagt 24453928  T
Q  455 tcagtgctctataaatagagctgaaacata 484  Q
    ||||| |||||||||||||||| |||||||    
T  24453927 tcagtactctataaatagagctaaaacata 24453898  T

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Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 366 - 484
Target Start/End: Original strand, 23233750 - 23233869
Alignment:
Q  366 aaagggatacgagagaaaaagtattatggaaatgatatattgaaagacagaaatatgtttataacatcaagcacaccattaca-aacacttcagtgctct 464  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||| || |||| ||||| ||    
T  23233750 aaagggatatgagagaaaaagtattatggaaatgatatattagaagacagaaataagtttataacatcaaacacaccattacacaatactttagtgccct 23233849  T
Q  465 ataaatagagctgaaacata 484  Q
    ||||||||||||||||||||    
T  23233850 ataaatagagctgaaacata 23233869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 354 - 469
Target Start/End: Complemental strand, 33330756 - 33330644
Alignment:
Q  354 ttgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattgaaagacagaaatatgtttataacatcaagcacaccattacaaacac 453  Q
    ||||||||||||||  ||||| ||||||||| ||| ||||||||||| |||| | ||||||||||||||||||||||||||| | || | ||||||||||    
T  33330756 ttgttggttttaaa--ggatatgagagaaaa-gtaatatggaaatgacatatcggaagacagaaatatgtttataacatcaaactcatccttacaaacac 33330660  T
Q  454 ttcagtgctctataaa 469  Q
    |||| |||||| ||||    
T  33330659 ttcactgctctgtaaa 33330644  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 600
Target Start/End: Complemental strand, 33330589 - 33330555
Alignment:
Q  566 aaaacttaataatatcataactgaaaatactaagg 600  Q
    |||||||| ||||||||||||||||||||||||||    
T  33330589 aaaacttattaatatcataactgaaaatactaagg 33330555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 49350188 - 49350303
Alignment:
Q  239 aagggaatgcatctttcttggacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatgaccattaatcttgatgcatttcaggga 338  Q
    |||||| ||||||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||||| |||    
T  49350188 aagggagtgcatctttcttggacttgaagttacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcatttcaagga 49350287  T
Q  339 atagcataggtagaat 354  Q
    ||||||||||||||||    
T  49350288 atagcataggtagaat 49350303  T

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Target: scaffold0004 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 250495 - 250599
Alignment:
Q  239 aagggaatgcatctttcttggacttgaagtaacaccataactcttcatcatttaagggaccggtatcagcatgaccattaatcttgatgcatttcaggga 338  Q
    |||||| ||||||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||||| |||    
T  250495 aagggagtgcatctttcttggacttgaagttacgccacaactcttcttcatttaagggaccagtatcaacatcaccattaatcttgaggcatttcaagga 250594  T
Q  339 atagc 343  Q
    |||||    
T  250595 atagc 250599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 484
Target Start/End: Complemental strand, 27174475 - 27174346
Alignment:
Q  354 ttgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattgaaagacagaaatatgtttataacatcaagcacaccattacaaacac 453  Q
    ||||||||||| || | |||| |||||||| |||| |||||||||||  ||||  || ||| |||||| || |||||||||||| |||  ||||||||||    
T  27174475 ttgttggttttgaa-gagatatgagagaaatagtaatatggaaatgacgtattagaaaacaaaaatattttgataacatcaagctcactcttacaaacac 27174377  T
Q  454 ttcagtgctctataaatagagctgaaacata 484  Q
    |||| |||| ||||||||||||| |||||||    
T  27174376 ttcactgctatataaatagagctcaaacata 27174346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 484
Target Start/End: Complemental strand, 27231280 - 27231151
Alignment:
Q  354 ttgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattgaaagacagaaatatgtttataacatcaagcacaccattacaaacac 453  Q
    ||||||||||| || | |||| |||||||| |||| |||||||||||  ||||  || ||| |||||| || |||||||||||| |||  ||||||||||    
T  27231280 ttgttggttttgaa-gagatatgagagaaatagtaatatggaaatgacgtattagaaaacaaaaatattttgataacatcaagctcactcttacaaacac 27231182  T
Q  454 ttcagtgctctataaatagagctgaaacata 484  Q
    |||| |||| ||||||||||||| |||||||    
T  27231181 ttcactgctatataaatagagctcaaacata 27231151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 638
Target Start/End: Complemental strand, 32149818 - 32149781
Alignment:
Q  601 aatactaagtcaatttctacaaatctcctccgtgcctt 638  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  32149818 aatactaaggcaatttctacaaatctcctccttgcctt 32149781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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