View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_high_5 (Length: 618)
Name: NF17723_high_5
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 30337231 - 30337831
Alignment:
| Q |
1 |
cggcattgtttgccgttactcctactttcatcttcttcagtatcgcaaactaagatcacacgttgttgagatgaacttcggcaactatgatgccgatgaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30337231 |
cggcgttgtttgccgttactcctactttcatcttcttaagtatcgcaaactaagatcacacgttgttgagatgaacttcggcaactatgattccgatgaa |
30337330 |
T |
|
| Q |
101 |
aaacaaaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgct |
200 |
Q |
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| T |
30337331 |
aaacaaaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgct |
30337430 |
T |
|
| Q |
201 |
tcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcaggcgtc |
300 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30337431 |
tcaacaaccgtgaaaatcctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcaggggtc |
30337530 |
T |
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| Q |
301 |
gttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttaggaaagaaaaagaatgatagtttctgatat-- |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30337531 |
gttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttgggaaagaaaaagaatgatagtttctgatataa |
30337630 |
T |
|
| Q |
399 |
--aagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtgacacctgaaattgcagata |
496 |
Q |
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| T |
30337631 |
gcaagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtaacacctgaaattccagata |
30337730 |
T |
|
| Q |
497 |
tgtactgtaatttcagagatttaattactagtttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaattagaattgttttattatt |
596 |
Q |
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| T |
30337731 |
tgtactgtaatttcagtgatttaattactagtttcctttatgttgtaagcctt--gagccaattaagaagttaatgaaaaatttgaattgttttattatt |
30337828 |
T |
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| Q |
597 |
ctg |
599 |
Q |
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||| |
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| T |
30337829 |
ctg |
30337831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 155 - 293
Target Start/End: Original strand, 30325748 - 30325886
Alignment:
| Q |
155 |
ttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactc |
254 |
Q |
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| T |
30325748 |
ttcacccctttcaactacctccgattactcaccttccgtgaatgcttcaacaacccagaaaaccccattaacctctctctttcccctttccctccatctc |
30325847 |
T |
|
| Q |
255 |
tccaacaactcgttttcatagataacctttctcccattc |
293 |
Q |
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| T |
30325848 |
tagaacatcttattttctttgacaacccttctcccattc |
30325886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30325594 - 30325642
Alignment:
| Q |
1 |
cggcattgtttgccgttactcctactttcatcttcttcagtatcgcaaa |
49 |
Q |
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| T |
30325594 |
cggcattgtttgccgttactcctactttcattttcttcagtatcgcaaa |
30325642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 30325962 - 30326004
Alignment:
| Q |
381 |
aatgatagtttctgatataagcacttttggctcaaaggctttt |
423 |
Q |
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| T |
30325962 |
aatgatagtttctcataaaagcacttttggctcaaaggctttt |
30326004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 30321812 - 30321862
Alignment:
| Q |
528 |
tttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaatta |
580 |
Q |
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| T |
30321812 |
tttcctttatattgtaagccttgag--ccaattaagaagttaatgaaaaatta |
30321862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 30333492 - 30333556
Alignment:
| Q |
403 |
acttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtt |
470 |
Q |
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| T |
30333492 |
acttttggctcaaaggctttta-ctattaaa--gtctcgtttgtttgaatgccctaaagtcacttgtt |
30333556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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