View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17723_low_1 (Length: 719)
Name: NF17723_low_1
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 1 - 708
Target Start/End: Original strand, 34694523 - 34695233
Alignment:
| Q |
1 |
aagaagatacgtgaacaattagaagaatttggccaagttggtgattccagtgtcttttactggtttcaaaaccgcaagtacagaagcaaaaccaacaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694523 |
aagaagatacgtgaacaattagaagaatttggccaagttggtgattccagtgtcttttactggtttcaaaaccgcaagtacagaagcaaaaccaacaaag |
34694622 |
T |
|
| Q |
101 |
taccctataacgagaaaccgggaacacaacaaaaagcagcttcaaatagctctctcccacaaatcaccacaccaccacccaactcatcttcattatcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
34694623 |
taccctataacgagaaaccgggaacacaacaaaaagcagcttcaaatagctctctcccacaaatcaacacaccaccacccaactcatcttcatcatcttc |
34694722 |
T |
|
| Q |
201 |
ctctaacaatatt---ggaatctccaatattaatgatgggaccgtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttat |
297 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694723 |
ctctaacaatattattggaatctccaatattaatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttat |
34694822 |
T |
|
| Q |
298 |
cctcacaccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgaca |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694823 |
cctcacaccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgaca |
34694922 |
T |
|
| Q |
398 |
tgataacgccagaggggtttaattacttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaattatgataa |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694923 |
tgataacgccagaggggtttaattacttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaattatgataa |
34695022 |
T |
|
| Q |
498 |
catcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34695023 |
catcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcat |
34695122 |
T |
|
| Q |
598 |
caacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcccctccctccggccattgacatgagtg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34695123 |
caacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtg |
34695222 |
T |
|
| Q |
698 |
cacctgatgat |
708 |
Q |
| |
|
|||||| |||| |
|
|
| T |
34695223 |
cacctgctgat |
34695233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 710
Target Start/End: Original strand, 34686591 - 34687306
Alignment:
| Q |
1 |
aagaagatacgtgaacaattagaagaatttggccaagttggtgattccagtgtcttttactggtttcaaaaccgcaagtacagaagcaaaaccaacaaag |
100 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||| || | |||||| ||| |||| |
|
|
| T |
34686591 |
aagaagatacgagaacaattacaagaatttggacaaattggtgatgcgagtgtcttttactggtttcaaaaccgcaagtccaaaggcaaaaacaaaaaag |
34686690 |
T |
|
| Q |
101 |
taccctataacgagaaaccgggaacacaacaaaaagcagcttca------aatagctctctcccacaaatcaccacaccaccacccaactcatcttcatt |
194 |
Q |
| |
|
|||||| | ||||| | || ||||| || |||| | || |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34686691 |
caccctaccccaagaaatcaaaaagacaaccaattgcagatccagctcttaataactctctcccacaaatcaccacaccaccacccaactcatcttcatc |
34686790 |
T |
|
| Q |
195 |
atcttcctctaacaatatt---ggaatctccaatattaatgatgggaccgtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgat |
291 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
34686791 |
atcttcctctaacaatattattggaatctccaatattaatgatgggacggtgatggtgcctaattcacctgcaatctctctgaaccaaaaccaagatgat |
34686890 |
T |
|
| Q |
292 |
acttatcctcacaccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgctta |
391 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34686891 |
acttatcctgacaccctcgctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgctta |
34686990 |
T |
|
| Q |
392 |
atgacatgataacgccagaggggtttaattacttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaatta |
491 |
Q |
| |
|
||||||||| ||| | |||||||| |||||||||||||| ||| || ||||||| | || | | ||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
34686991 |
atgacatgacaacactagaggggtctaattacttctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaatta |
34687090 |
T |
|
| Q |
492 |
tgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcat |
591 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| |||| || |||| |||||| |||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
34687091 |
tgataacatcatgaacaatgaaaatgaaaatggaatctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcac |
34687190 |
T |
|
| Q |
592 |
atgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcccctccctccggccattgaca |
691 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
34687191 |
atgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg---attcaactgatcttgctcctctacctccggccattgaca |
34687287 |
T |
|
| Q |
692 |
tgagtgcacctgatgatgt |
710 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
34687288 |
tgagtgcacctgttgatgt |
34687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 205 - 434
Target Start/End: Original strand, 8284680 - 8284906
Alignment:
| Q |
205 |
aacaatattggaatctccaatattaatgatgggaccgtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcaca |
304 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||| ||| || | |||||||||||||| | || |||||||||| |||| |||| ||||| ||| | |
|
|
| T |
8284680 |
aacaatatcggattctccaatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaa |
8284779 |
T |
|
| Q |
305 |
ccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataac |
404 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||||||| ||||||||| || |||||||||||||| || ||||||| ||||| ||||| | | |
|
|
| T |
8284780 |
cccctactggaaccgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaa---gtagtgcctaatgccatgacacc |
8284876 |
T |
|
| Q |
405 |
gccagaggggtttaattacttctctggttt |
434 |
Q |
| |
|
||| | |||||||| |||| |||||||| |
|
|
| T |
8284877 |
accacataggtttaatcacttatctggttt |
8284906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 8284451 - 8284527
Alignment:
| Q |
3 |
gaagatacgtgaacaattagaagaatttggccaagttggtgattccagtgtcttttactggtttcaaaaccgcaagt |
79 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
8284451 |
gaagatacgtgaacaattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagt |
8284527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 680
Target Start/End: Original strand, 8284953 - 8285179
Alignment:
| Q |
454 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
553 |
Q |
| |
|
||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
|
|
| T |
8284953 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
8285052 |
T |
|
| Q |
554 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
653 |
Q |
| |
|
||||||| ||||||||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | |
|
|
| T |
8285053 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
8285152 |
T |
|
| Q |
654 |
ttcaactgatcttgctcccctccctcc |
680 |
Q |
| |
|
||| |||||||||||| || ||||| |
|
|
| T |
8285153 |
gtcagttgatcttgctcctcttcctcc |
8285179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University