View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_13 (Length: 397)
Name: NF17723_low_13
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 221 - 386
Target Start/End: Complemental strand, 8237380 - 8237215
Alignment:
| Q |
221 |
tccaacaaacaaccatgctttttagaagctaagttgtaattattttagaagccacaggcttttgaactgccattgtttcttgaggtgcctttcgcaaata |
320 |
Q |
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| T |
8237380 |
tccaacaaacaaccatgctttttagaagctaagttgtaattattttagaagccacagccttttgaactgccattgtttcttgaggtgcctttcgcaaata |
8237281 |
T |
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| Q |
321 |
tgccacacattcaaacatatatacttaaacttgaatctaatgagatctatatatttttcatctcac |
386 |
Q |
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| T |
8237280 |
tgccacacattcaaatatatatacttacacttgaatctaatgagatctatatatttttcatgtcac |
8237215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 8237584 - 8237482
Alignment:
| Q |
15 |
ataaataaattaagttctggtcaaaaaataaaacaaattaagttagatgaagttttataaggtgttagttgttacatgtattatcaaaaaatcgataatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8237584 |
ataaataaattaagttctggtcaaaaaataaaacaaattaagttagatgaagttttataaggtgttagttgttacatgtattatcaaaaaatcgataatt |
8237485 |
T |
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| Q |
115 |
gat |
117 |
Q |
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||| |
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| T |
8237484 |
gat |
8237482 |
T |
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