View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_14 (Length: 384)
Name: NF17723_low_14
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 4676795 - 4677150
Alignment:
| Q |
15 |
aaaataatagtgttcatgtgagggtacctcagttagtacccgtctatttactagtatctatagcaaggatataagactttaattaaaaaactagttaagt |
114 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676795 |
aaaataatagtgttcatgtgagggtaactcagttagtacccgtctatccactagtatctatagcaaggatataagactttaattaaaaaactagttaagt |
4676894 |
T |
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| Q |
115 |
ttcatgataataagaacaatatcttaatagaaaaagaggaacggcaagggagcttgcaacaaactatttatctttttcgattctcatattctcttttctt |
214 |
Q |
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| T |
4676895 |
ttcatgataataagaacaatatcttaataaaaaaagaggaacggcaagggagcttgcaacaaactatttatctttttcgattctcatgttctcttttctt |
4676994 |
T |
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| Q |
215 |
tgcactttcctttacccttcccttgttttcattatttcttgttgtgacctat---ttatatatttccatcgctacagcctacatgtaccatttcaccgct |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676995 |
tgcactttcctttacccttcccttgttttcattatttcttggtgtgacctatttattatatatttccatcgctacagcctacatgtaccatttcaccgct |
4677094 |
T |
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| Q |
312 |
cgagtattgtttttgcccaataactaaggtatgtatcccatcaaattggaaataat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677095 |
cgagtattgtttttgcccaataactaaggtatgtatcccatcaaattggaaataat |
4677150 |
T |
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