View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_18 (Length: 352)
Name: NF17723_low_18
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 4677153 - 4677485
Alignment:
| Q |
1 |
atctcacgactctttagtcattcatatttatgctatgatcaaaatttatgtttctcctatttaagaaagtgttgttcattgtggtaacaaaacctaaagg |
100 |
Q |
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| T |
4677153 |
atctcacgactctttagtcattcatatttatgctatgatcaaaatttatgtttctcctatttaagaaagtgttgttcattgtggtaacaaaacctaaagg |
4677252 |
T |
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| Q |
101 |
ttctacttctttctaatcttagaaaatatattggaagaattcnnnnnnntcacgcttggtatagtaaatcaaccggtaaagaatatgcatgagttttagg |
200 |
Q |
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| T |
4677253 |
ttctacttctttctaatcttagaaaatatattagaagaattcaaaaaaatcacgcttagtatagtaaatcaaccggtaaagaatatgcatgagttttagg |
4677352 |
T |
|
| Q |
201 |
nnnnnnnnntactatgtattgtttcaaaattaagttcctactt---atcttgacttgatannnnnnnnnnnnnnnncagcttcttttgattatttgaaag |
297 |
Q |
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| T |
4677353 |
-aaaaaaaatactatgtattgtttcaaaattaagttcctacttataatcttgacttgata----ttttttttttttcagcttcttttgattatttgaaag |
4677447 |
T |
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| Q |
298 |
atcatgggggtaaagtatgaaggacgtgctgtgggaat |
335 |
Q |
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| T |
4677448 |
atcatgggggtaaagtatgaaggacgtgctgtgggaat |
4677485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 1302529 - 1302468
Alignment:
| Q |
274 |
cagcttcttttgattatttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaat |
335 |
Q |
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| T |
1302529 |
cagcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaat |
1302468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 8660462 - 8660409
Alignment:
| Q |
274 |
cagcttcttttgattatttgaaagatcatgggggtaaagtatgaaggacgtgct |
327 |
Q |
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| T |
8660462 |
cagcttcttttgattatttgaacgatcatggggataaagtacgaaggacgtgct |
8660409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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