View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_19 (Length: 340)
Name: NF17723_low_19
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 80 - 328
Target Start/End: Complemental strand, 34525747 - 34525499
Alignment:
| Q |
80 |
aatttgcaatttttctatttataaattttcttagttatatcaactttttctaatagttatactatcatttattaatttaataatttatttgtgtgtaata |
179 |
Q |
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| T |
34525747 |
aatttgcaatttttctatttctaaattttcgtagttatttcaactttttctaatagttatactatcatttattcatttaataatttatttatgtgtaata |
34525648 |
T |
|
| Q |
180 |
gtataactcactttgccactttgatatccaacatttaatcagatgcataaagttagatgcttcctcacaaccaaagtactgagtgatccatcctcctccc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525647 |
gtataactcactttgccactttgatatccaacatttaatcagatgcataaagttagatgcttcctcacaaccaaagtactgagtgatccatcctcctccc |
34525548 |
T |
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| Q |
280 |
acaatattctctataccaattaatttcctgttaccatgtgaacacaggt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525547 |
acaatattctctataccaattaatttcctgttaccatgtgaacacaggt |
34525499 |
T |
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