View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_21 (Length: 334)
Name: NF17723_low_21
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_21 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 20827516 - 20827822
Alignment:
| Q |
17 |
ctaataatctaagttaatattccatgatttaatttcatgcatcttctcctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgac |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20827516 |
ctaataatctaagttaatattccatgatttaatttcatgcatcttcttctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgac |
20827615 |
T |
|
| Q |
117 |
taccaattgcttcattgtctctttaaacacatttggtggtaaggctttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacattt |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20827616 |
taccaattgcttcattgtctcttcaaacacatttggtggtaaggctttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacattt |
20827715 |
T |
|
| Q |
217 |
cattcataaataaataaatattctcttaaacatgttaacacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20827716 |
cattcataaataaataaatattctcttaaacatgttaccacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatt |
20827815 |
T |
|
| Q |
317 |
tagcaga |
323 |
Q |
| |
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||||||| |
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|
| T |
20827816 |
tagcaga |
20827822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 44933984 - 44933678
Alignment:
| Q |
17 |
ctaataatctaagttaatattccatgatttaatttcatgcatcttctcctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgac |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44933984 |
ctaataatctaagttaatattccatgatttaatttcatgcatcttcttctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgac |
44933885 |
T |
|
| Q |
117 |
taccaattgcttcattgtctctttaaacacatttggtggtaaggctttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacattt |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44933884 |
taccaattgcttcattgtctcttcaaacacatttggtggtaaggctttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacattt |
44933785 |
T |
|
| Q |
217 |
cattcataaataaataaatattctcttaaacatgttaacacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44933784 |
cattcataaataaataaatattctcttaaacatgttaccacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatt |
44933685 |
T |
|
| Q |
317 |
tagcaga |
323 |
Q |
| |
|
||||||| |
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|
| T |
44933684 |
tagcaga |
44933678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 30060 - 30366
Alignment:
| Q |
17 |
ctaataatctaagttaatattccatgatttaatttcatgcatcttctcctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30060 |
ctaataatctaagttaatattccatgatttaatttcatgcatcttctcctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgac |
30159 |
T |
|
| Q |
117 |
taccaattgcttcattgtctctttaaacacatttggtggtaaggctttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacattt |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30160 |
taccaattgcttcattgtctcttcaaacacatctggtggtaagactttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacattt |
30259 |
T |
|
| Q |
217 |
cattcataaataaataaatattctcttaaacatgttaacacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30260 |
cattcataaataaataaatattctcttaaacatgttaccacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatt |
30359 |
T |
|
| Q |
317 |
tagcaga |
323 |
Q |
| |
|
||||||| |
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|
| T |
30360 |
tagcaga |
30366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 47054551 - 47054853
Alignment:
| Q |
21 |
taatctaagttaatattccatgatttaatttcatgcatcttctcctggctttggtgttttctctcccacttcattatgccatttcgcgagcccgactacc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47054551 |
taatctaagttaatattccatgatttaatttcatgcatcttctcttggctttggtgttttctctcccacttcattatgccatttcgcgagcccgactacc |
47054650 |
T |
|
| Q |
121 |
aattgcttcattgtctctttaaacacatttggtggtaaggctttcaatgtttggaatatggtttcagcttcattatgaccagactgcataacatttcatt |
220 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
47054651 |
aattgcttcattgtctcttcaaacacatctggtggtaaggctttcaatgtttggaatatggtttcaacttcattatgaccagactgcataacatttcatt |
47054750 |
T |
|
| Q |
221 |
cataaataaataaatattctcttaaacatgttaacacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatttagc |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47054751 |
cataaataaataaatattctcttaaacatgttaccacaagtaaatactctcttagtaaagttaaaagacttaccacattattagtccccacagatttagc |
47054850 |
T |
|
| Q |
321 |
aga |
323 |
Q |
| |
|
||| |
|
|
| T |
47054851 |
aga |
47054853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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