View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17723_low_23 (Length: 314)
Name: NF17723_low_23
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 44829036 - 44829337
Alignment:
| Q |
1 |
ttataatatacatttctttttctagaaactgcctgatctgcagtcattttttcatttctattttgcaagaaatgttttcaaaaagtagtaaatagacgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44829036 |
ttataatatacatttctttttctagaaactgcctgatctgcagtcattttttcatttctattttgcaagaaatgttttcagaaagtagtaaatagacgac |
44829135 |
T |
|
| Q |
101 |
acaaatttaacatagattgatcaataacatttgacatcaaatgcatattaaacatacactttcacttcctaaaaattttcatgtaataggattcacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44829136 |
acaaatttaacatagattgatcaataacatttgacatcaaatgcatattaaacatacactttcacttcctaaaaattttcatgtaagaggattcacaaca |
44829235 |
T |
|
| Q |
201 |
tgtcattgaaatttataagtcaaacacacctggctaaatgtatccaagacgtatatggaggtaacctgttgatgcttggcatcctgatagttctcacagg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829236 |
tgtcattgaaatttataattcaaacacacctggctaaatgtatccaagacgtatatggaggtaacctgttgatgcttggcatcctgatagttctcacagg |
44829335 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
44829336 |
tt |
44829337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University