View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17723_low_24 (Length: 314)

Name: NF17723_low_24
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17723_low_24
NF17723_low_24
[»] chr6 (1 HSPs)
chr6 (1-314)||(4931630-4931943)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 4931630 - 4931943
Alignment:
Q  1 gatatggaatatacatcacatatttcacctttcaccctttcaacattacaatcatttacttatcaatcatttacaccatacgcccatgccgaagcctcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4931630 gatatggaatatacatcacatatttcacctttcaccctttcaacattacaatcatttacttatcaatcatttacaccatacgcccatgccgaagcctcca 4931729  T
Q  101 cagttgtgcacacggacaccttttaatcattttaatatatcatgaatttttgagtagttatgatcgaaaactacgatctcatgcaagaattactcttcaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4931730 cagttgtgcacacggacaccttttaatcattttaatgtatcatgaatttttgagtagttatgatcgaaaactacgatctcatgcaagaattactcttcaa 4931829  T
Q  201 aatatcaaaatgattcccatgtaatcgaggcaaatgaatttccaatcacaaataccgccccgatctcttgagtcaatctatcagtatcattggatataag 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||    
T  4931830 aatatcaaaatgattcccatgtaatcgagggaaatgaatttccactcacaaataccgccccgatttcttgattcaatcgatcagtatcgttggatataag 4931929  T
Q  301 accatatagctctc 314  Q
    ||||||||| ||||    
T  4931930 accatatagttctc 4931943  T

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