View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17723_low_25 (Length: 294)

Name: NF17723_low_25
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17723_low_25
NF17723_low_25
[»] chr5 (20 HSPs)
chr5 (1-278)||(29871453-29871733)
chr5 (1-278)||(30748910-30749190)
chr5 (5-278)||(30242928-30243204)
chr5 (1-278)||(30435089-30435369)
chr5 (1-278)||(30482671-30482951)
chr5 (1-278)||(30339081-30339361)
chr5 (1-272)||(30677730-30678004)
chr5 (5-275)||(29852570-29852855)
chr5 (1-184)||(30714087-30714270)
chr5 (1-185)||(30399332-30399516)
chr5 (3-184)||(30059626-30059807)
chr5 (1-184)||(17418822-17419005)
chr5 (204-278)||(30713978-30714052)
chr5 (202-277)||(30399548-30399623)
chr5 (1-79)||(4380925-4381003)
chr5 (204-278)||(30059842-30059916)
chr5 (3-177)||(30205782-30205956)
chr5 (135-180)||(30474773-30474818)
chr5 (143-178)||(4381005-4381040)
chr5 (226-272)||(30206020-30206066)
[»] chr4 (2 HSPs)
chr4 (1-182)||(20297258-20297439)
chr4 (202-278)||(20297147-20297223)
[»] chr7 (2 HSPs)
chr7 (1-185)||(26706599-26706783)
chr7 (202-278)||(26706815-26706891)
[»] chr1 (4 HSPs)
chr1 (204-278)||(7098897-7098971)
chr1 (57-182)||(7098735-7098860)
chr1 (129-190)||(7582378-7582439)
chr1 (204-272)||(7582281-7582349)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29871453 - 29871733
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||| |  ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  29871453 agagatggtagtttaccaagtaacggaagccgcacaatcttgttgcaatcctcaagtttaagagaaattaaattactaagaataattatccaacttggta 29871552  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat---- 196  Q
    ||||||||||||||||| |||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  29871553 acgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcctgttg 29871652  T
Q  197 cactctcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    |  | | ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29871653 cgatat-ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaac 29871733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 30748910 - 30749190
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  30748910 agagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaataattatccaacttggta 30749009  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcatcact 200  Q
    ||||||||||||||||| |||||||   |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||   ||||||| ||  |    
T  30749010 acgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagattcctcctt 30749109  T
Q  201 ct---cccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
     |   |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30749110 gtatacccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaac 30749190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 30243204 - 30242928
Alignment:
Q  5 atggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggtaacga 104  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||    
T  30243204 atggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaagga 30243105  T
Q  105 taatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat----cact 200  Q
    |||||| |||||| || |||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||       |    
T  30243104 taatccctcatagaaacttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatagattcatgttgggat 30243005  T
Q  201 ctcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
     | ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30243004 at-ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaac 30242928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 30435089 - 30435369
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30435089 agagatggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataattatccaacttggta 30435188  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat---- 196  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |        
T  30435189 acgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtaattgctcagatctaattatagattcctgttg 30435288  T
Q  197 cactctcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    |  | | ||| ||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  30435289 cgatat-ccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaac 30435369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 30482671 - 30482951
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||   | |||||||||||||    
T  30482671 agagatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaaggcttatccaacttggta 30482770  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat---- 196  Q
    ||||||| ||||||| | |||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |        
T  30482771 acgataacccttcattgtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcaagtacttgctcagcactaattatagattcctgttg 30482870  T
Q  197 cactctcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
       | | ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  30482871 ggatat-ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaac 30482951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30339361 - 30339081
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||   | |||||||||||||    
T  30339361 agagatggtagtttaccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaaggcttatccaacttggta 30339262  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcat---- 196  Q
    ||||||||||||||||| ||||||    |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |        
T  30339261 acgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaattatagattcctgttg 30339162  T
Q  197 cactctcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    |  | | ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  30339161 cgatat-ccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaac 30339081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 30678004 - 30677730
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    |||||||||||||||||| || |||||||||||||||||| |||||| | |  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  30678004 agagatggtagtttaccacgtaacggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataattatccaacttggta 30677905  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcatcact 200  Q
    ||||||||| ||||||| |||||||   |||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||   ||||||| ||  |    
T  30677904 acgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggtttaagcacttcaagtacttgctcagcactaaccgtagattcctcctt 30677805  T
Q  201 ct---cccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaact 272  Q
     |   |||||||||||| ||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  30677804 gtatccccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaact 30677730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 29852570 - 29852855
Alignment:
Q  5 atggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggtaacga 104  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||   | |||||||||||||||||    
T  29852570 atggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttggtaacga 29852669  T
Q  105 taatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat------------tatagat 192  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||              || ||    
T  29852670 taatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcatcatgaatagttgggggctcagtaaat 29852769  T
Q  193 tcatca---ctctcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgcc 275  Q
     |||||   || ||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29852770 ccatcattgctttcccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcc 29852855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 30714270 - 30714087
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||    |||| ||||||||| |||||||||||||||||| |||||||||||||    
T  30714270 agagatggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaataattatccaacttggta 30714171  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 184  Q
    | ||||||||||||||| |||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30714170 atgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 30714087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 30399332 - 30399516
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||| ||||||||||||| | || |||| ||||||| ||  |||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  30399332 agagacggtagtttaccaattaactgaagtcgcacaactttcttgcaattcccaagttcaagagaaactaaattactaagaataattatccaacttggta 30399431  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat 185  Q
    | |||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  30399432 atgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaagcacttcgagtacttgctgagcactaat 30399516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 30059626 - 30059807
Alignment:
Q  3 agatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggtaac 102  Q
    |||||||||| |||||||| || |||||||||||| ||  || |||  |  ||||| |||||||| |||||||||||||||||| ||||||||||| ||     
T  30059626 agatggtagtataccaagtaactgaagccgcacaactttcttacaacgcttaagtttaagagaaactaaattactaagaataattatccaacttggcaag 30059725  T
Q  103 gataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 184  Q
    |||||||| |||||| || |||| | |||||| |||||||||||||||||||||||  |||| |||||||||||| ||||||    
T  30059726 gataatccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 30059807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 17419005 - 17418822
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcaca-atttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggt 99  Q
    |||||| |||||||||||| ||||| |||||||||| | ||| |  ||||| | |||| ||| |  || |||||||||||||||| | ||||||||||||    
T  17419005 agagattgtagtttaccaaatgacgaaagccgcacacagttc-tcacaattactaagtgcaacattaactaaattactaagaatacttatccaacttggt 17418907  T
Q  100 aacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 184  Q
    ||| ||| ||| |||||| || |||| | ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  17418906 aacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagttgctcagcactaa 17418822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 30714052 - 30713978
Alignment:
Q  204 ccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    ||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  30714052 ccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaac 30713978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 30399548 - 30399623
Alignment:
Q  202 tcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaa 277  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||    
T  30399548 tcccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaa 30399623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4380925 - 4381003
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaa 79  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||   ||||||| ||||||||||||||||||||    
T  4380925 agagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 30059842 - 30059916
Alignment:
Q  204 ccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    ||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  30059842 ccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaac 30059916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 30205782 - 30205956
Alignment:
Q  3 agatggtagtttaccaagtgacggaagccgcaca-atttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggtaa 101  Q
    |||| |||||||||||| |||||||||||||||| ||||| |  |||||||||||| |||||| || ||||||||| |||||| | ||||||||||||||    
T  30205782 agattgtagtttaccaaatgacggaagccgcacacatttc-tcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaa 30205880  T
Q  102 cgataatccttcatag---caatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctca 177  Q
      ||||||  | ||||   ||| ||||   ||| | ||||||||||||||||||||||||| |||| | || |||||||    
T  30205881 gaataatctgttatagtgacaaattat---caacctcttgagatttgagtgaggttgaagcacttcaaatagttgctca 30205956  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 30474773 - 30474818
Alignment:
Q  135 cttgagatttgagtgaggttgaagctcttcgagtacttgctcagca 180  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||    
T  30474773 cttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 4381005 - 4381040
Alignment:
Q  143 ttgagtgaggttgaagctcttcgagtacttgctcag 178  Q
    |||||||||||||||||||||||| |||||||||||    
T  4381005 ttgagtgaggttgaagctcttcgaatacttgctcag 4381040  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 30206020 - 30206066
Alignment:
Q  226 aggtctgttttacccatcaaattagccgcttcagcttcagataaact 272  Q
    |||||| |||||||||||||||| || |||| |||||||||||||||    
T  30206020 aggtcttttttacccatcaaattggctgcttgagcttcagataaact 30206066  T

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Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 20297439 - 20297258
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||  |||||||| ||||| |||||||||||||||||| |||||||||||||    
T  20297439 agagatggtagtttaccaattaacggaagctgcacaatttcgttgcaattctcaagttcaaaagaaactaaattactaagaataattatccaacttggta 20297340  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcact 182  Q
    || | ||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  20297339 accacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcgagtactttctcagcact 20297258  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 20297223 - 20297147
Alignment:
Q  202 tcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    ||||| ||||||| ||||| |||||||||| |||||||||||||||| ||  ||| ||||||||||| |||||||||    
T  20297223 tcccaagacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaac 20297147  T

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Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 26706599 - 26706783
Alignment:
Q  1 agagatggtagtttaccaagtgacggaagccgcacaatttcgttgcaattccaaagttcaagagaaattaaattactaagaataatcatccaacttggta 100  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||||||| || |||||||||||||| |||||||||||||||| | | |||||||||||    
T  26706599 agagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaatccccaagttcaagagaaactaaattactaagaatacttacccaacttggta 26706698  T
Q  101 acgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat 185  Q
    | |||||||| || ||| | ||||| ||||||||||||||||||||||||||||||||| ||| |||||  |||||| |||||||    
T  26706699 atgataatccgtcgtagtactttatttccaagcacttgagatttgagtgaggttgaagcactttgagtagctgctcaacactaat 26706783  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 26706815 - 26706891
Alignment:
Q  202 tcccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    ||||||||||||| |||||  |  |||| | |||| ||||||||||| ||  ||| |||||||||||||||||||||    
T  26706815 tcccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaac 26706891  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 7098897 - 7098971
Alignment:
Q  204 ccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaactgccaac 278  Q
    ||||||||||| ||||| ||  |||||| |||||||||| ||||| ||  ||| ||||||||||||||| |||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaac 7098971  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 7098735 - 7098860
Alignment:
Q  57 ttcaagagaaattaaattactaagaataatcatccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttga 156  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| ||| | ||||| |||||||||||  |||||||||    
T  7098735 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 7098834  T
Q  157 agctcttcgagtacttgctcagcact 182  Q
    ||| |||| | |||||| ||| ||||    
T  7098835 agcacttcaattacttgatcatcact 7098860  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 7582439 - 7582378
Alignment:
Q  129 caagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatag 190  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||||| ||  ||||||| ||||    
T  7582439 caagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatag 7582378  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 7582349 - 7582281
Alignment:
Q  204 ccatgacaagcgtaattgatgaaggtctgttttacccatcaaattagccgcttcagcttcagataaact 272  Q
    ||||||||||| ||||| ||  |||||| ||||||||||||| || ||  ||| |||||||||||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaact 7582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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